2003

Bhalerao, S., Sen, A., Stocker, R. and Rodrigues, V. (2003).
Olfactory neurons expressing identified receptor genes project to subsets of
glomeruli within the antennal lobe of Drosophila melanogaster.
Journal Neurobiology, 54, 577-592.

Bhalla, U.S. (2003).
Temporal computation by synaptic signaling pathways.
Journal of Chemical Neuroanatomy (In press).

Bhalla, U.S. (2003).
Managing models of signaling networks.
Neurocomputing, 52, 215-220.

Bhalla, U.S. (2003).
Understanding complex signaling networks through models and metaphors.
Progress in Biophysics & Molecular Biology, 81: 45-65 (Review)

Bhutani, N. and Udgaonkar, J.B. (2003).
Folding subdomains of thioredoxin detected by native state hydrogen exchange.
Protein Science, 12, 1719-1731.

Chakrabarti, O. and Krishna, S. (2003).
Molecular interactions of “high risk” human papillomaviruses E6 and
E7 oncoproteins: implications in tumor progression.
Journal of Biosciences, 28, 337-348.

Chakrabarti, S. and Sowdhamini, R. (2003).
Potentials of fold recognition methods in structure prediction of homoserine lactone synthases.
In: Recent trends in Bioinformatics, ed. Shanmughael, P., Madurai Kamaraj University, Madurai

Chakrabarti, S. and Sowdhamini, R. (2003).
Functional sites and evolutionary connections of acylhomoserine lactone synthases.
Protein Engineering, 16 (4): 271-278

Chakrabarti, S., Venkataramanan, K. and Sowdhamini, R. (2003).
PASS2: Structural motifs of protein superfamilies.
Nucleic Acids Research, http://www3.oup.co.uk/nar/database/summary/275

Deshmukh, S.S, and Bhalla, U.S. (2003).
Representation of odor habituation and timing in the hippocampus.
The Journal of Neuroscience, 23 (5): 1903-1915.

Dhawan, R., Varshney, A., Mathew, M.K. and Lala, A.K. (2003).
BTK-2, a new inhibitor of the Kv1.1 potassium channel purified from Indian
scorpion Buthus tamulus.
FEBS Letters, 539: 7-13.

Ghazi, A. and VijayRaghavan, K. (2003).
Myogenesis in Drosophila.
Proceedings in Indian National Science Academy B, 5, 691-702.

Godbole, A., Varghese, J., Sarin, A. and Mathew, M.K. (2003).
VDAC is a conserved element of death pathways in plant and animal systems.
Biochimica et Biophysica Acta, 1642, 87-96.

Guha, A., Sriram, V., Krishnan K.S. and Mayor, S. (2003).
shibire mutations reveal distinct dyanmin-independent and - dependent
endocytic pathways in primary cultures of Drosophila hemocytes,
Journal of Cell Science 2003, 116, 3373-3386.

Ghazi, A., Paul, L. and VijayRaghavan, K. (2003).
Prepattern genes and signaling molecules regulate stripe expression to
specify Drosophila flight muscle attachment sites.
Mechanisms of Development, 120, 519-528.

Hasan, G. (2003).
Biological implications of Inositol 1,4,5-trisphosphate signaling from genetic
studies in multicellular organisms.
Proceedings of the Indian National Science Academy B69, 741-752.

Hatwalne, Y., Ramaswamy, S., Rao, M. and Simha, R.A. (2003).
Rheology of active particle suspensions.
lanl eprint: cond-mat/0308529.

Hussaini, A., Krishnan, P., Abhishek, V. and Siddiqi, O. (2003).
A rapid method for measuring olfactory responses of Drosophila larva.
Current Science, 85, 101-102.

Jhaveri, D. and Rodrigues, V. (2003).
Perchance to smell.
Proceedings of the Indian National Science Academy B, 69, 29-39.

Joshi, R., Venkatesh, K., Srinivas, R., Nair, S. and Hasan G. (2003).
Genetic dissection of ltpr gene function reveals a vital requirement in aminergic
cells of Drosophila larvae.
Genetics, 166, 225-236.

Juneja, J. and Udgaonkar, J.B. (2003).
NMR studies of protein folding.
Current Science, 84, 157-172.

Krishnan, K.S. (2003).
Principles of Animal Motion.
Current Science, 85, 97-98

Mallik, R., Udgaonkar, J.B. and Krishnamoorthy, G. (2003).
Kinetics of proton transfer in a green fluorescent protein: a laser-induced pH jump study.
Proceedings of the Indian Academy of Sciences (Chemical Sciences). 115, 307 - 317.

Nair, P., Somasundaram, K. and Krishna. S. (2003).
Activated Notch1 through PKB/Akt inhibits p53 induced apoptosis and sustains
transformation by HPV 16 E6 and E7 oncogenes.
Journal of Virology, 77, 7106-7112.

Pollock, V. P., Radford, J.C., Pyne, S., Hasan, G., Dow, J.A.T. and Davies, S-A. (2003).
norpA and itpr mutants reveal roles for phospholipase C and inositol 1, 4,
5 trisphosphate receptor in Drosophila melanogaster renal function.
Journal of Experimental Biology, 206, 901-911.

Rami, B. and Udgaonkar, J.B. (2003).
Dynamics of the core tryptophan during the formation of a productive
molten globule intermediate of barstar.
Biochemistry, 42, 7986-8000.

Richa Rikhy, Mani Ramaswami and K. S. Krishnan (2003).
A temperature sensitive allele of Drosophila Ses B reveals acute functions for
the mitochondrial adenine nucleotide translocase in synaptic transmission and Dynamin regulation
Genetics, 165, 1243-53.

Richa Rikhy and K. S. Krishnan (2003).
Cellular Traffic: A synaptic detour.
Proc. Ind. Natl. Sci. Acad B, 69, 463-499.

Roopa, T and Shivashankar, G.V. (2003).
Nanomechanics of membrane tubulation and DNA assembly.
Applied Physics Letters, 82, 1631-1633.

Sade, H. and Sarin, A. (2003).
Interleukin-7 blocks caspase-independent apoptosis in mature T cells via
phosphatidylinositol-3 kinase (PI-3K)-mediated survival signalling.
European Journal of Immunology, 33, 913-919.

Sade, H. and Sarin, A. (2003).
Reactive oxygen species regulate quiescent T cell apoptosis via the BH3-only
pro-apoptotic protein BIM.
Cell Death and Differentiation 11, 416-23.

Sandhya, S., Kishore, S., Sowdhamini, R. and Srinivasan, N. (2003)
Effective detection of remote homologues by searching in sequence dataset
of a protein domain fold.
FEBS Letters 552, 225-30.

Sen, A., Reddy, G. V. and Rodrigues, V. (2003).
Combinatorial expression of Prospero, Seven-up and Elav, identify progenitor cell
types during sense-organ differentiation in the Drosophila antenna.
Developmental Biology, 254, 79-92.

Sivakumaran, S., Hariharaputran, S., Mishra, J. and Bhalla, U.S. (2003).
The database of quantitative cellular signaling: Repository and analysis tools
for chemical kinetic models of signaling networks.
Bioinformatics, 19, 408-415.

Soni, G.V., Jaffar Ali, B.M., Hatwalne, Y. and Shivashankar, G.V. (2003).
Single particle tracking of correlated bacterial dynamics.
Biophysical Journal, 84, 2634-2637.

Sridevi, K. and Udgaonkar, J.B. (2003).
Surface expansion occurs faster than and independent of core solvation during
the unfolding of barstar.
Biochemistry, 42, 1551-1563.

Sriram, V., Krishnan, K. S. and Mayor, S. (2003).
Deep-orange and carnation define distinct stages in late endosomal biogenesis in
Drosophila melanogaster.
Journal of Cell Biology, 161, 593-607.

Sudarslal, S., Majumdar S, Ramasamy P, Dhawan R, Pal PP, Lala AK, Sikdar SK,
Sarma SP, Krishnan KS and Balaram P.
Sodium channel modulating activity in a d-conotoxin from an Indian marine snail.
FEBS Lett. 553(1-2): 209-12, 2003.

Varghese, J., Khandre, N. and Sarin, A. (2003).
Caspase-3 activation is an early event and initiates apoptotic damage in a human
leukemia cell line.
Apoptosis, 8, 363-373.

Varshney, A. and Mathew M.K. (2003).
Inward and outward potassium currents through the same chimæric human Kv Channel.
European Biophysics Journal, 32, 113-121.

Varshney, A. and Mathew, M.K. (2003).
A tale of two tails: Cytoplasmic termini and K+ channel function.
Progress in Biophysics and Molecular Biology, 83, 153-170.

Vinayagam, A., Shi, J., Pugalenthi, G., Meenakshi, B., Blundell, T.L. and Sowdhamini, R. (2003).
DDBASE2.0: Updated domain database with improved methods for the identification
of structural domains.
Bioinformatics 19, 1760-1764.

Vyas, A., Bernal, S. and Chattarji, S. (2003).
Effects of chronic stress on dendritic arborization in the central and extended amygdala.
Brain Research, 965, 290-294.

Vyas, A., Mitra, R. and Chattarji, S. (2003).
Enhanced anxiety and hypertrophy in basolateral amygdala neurons following
chronic stress in rats. "The Amygdala in Brain Function: Basic and Clinical Approaches"
Annals of New York Academy of Sciences, 985, 554-555.