Author Title Type [ Year(Asc)]
2018
Vishen ASingh, Rupprecht J-F, Shivashankar GV, Prost J, Rao M.  2018.  Soft inclusion in a confined fluctuating active gel.. Phys Rev E. 97(3-1):032602.
Gopurappilly R, Deb BKumar, Chakraborty P, Hasan G.  2018.  Stable Knockdown in Self-Renewing Human Neural Precursors Promotes Premature Neural Differentiation.. Front Mol Neurosci. 11:178.
Gardner B, Sollmann R, N Kumar S, Jathanna D, K Karanth U.  2018.  State space and movement specification in open population spatial capture-recapture models.. Ecol Evol. 8(20):10336-10344.
Chakraborty S, Hasan G.  2018.  Store-Operated Ca Entry in Drosophila Primary Neuronal Cultures.. Methods Mol Biol. 1843:125-136.
Jayanth N, Ogirala N, Yadav A, Puranik M.  2018.  Structural basis for substrate discrimination by E. coli repair enzyme, AlkB. RSC ADVANCES. 8(3):1281-1291.
Sengupta I, Udgaonkar JB.  2018.  Structural mechanisms of oligomer and amyloid fibril formation by the prion protein.. Chem Commun (Camb).
Kendroud S, Bohra AA, Kuert PA, Nguyen B, Guillermin O, Sprecher SG, Reichert H, VijayRaghavan K, Hartenstein V.  2018.  Structure and development of the subesophageal zone of the Drosophila brain. II. Sensory compartments.. J Comp Neurol. 526(1):33-58.
Srivathsa A, Puri M, Kumar NS, Jathanna D, Karanth KU.  2018.  Substituting space for time: Empirical evaluation of spatial replication as a surrogate for temporal replication in occupancy modelling . JOURNAL OF APPLIED ECOLOGY . 55(55 ):754-765.
Singh D, Bhalla USingh.  2018.  Subunit exchange enhances information retention by CaMKII in dendritic spines.. Elife. 7
Brockmann A, Basu P, Shakeel M, Murata S, Murashima N, Boyapati RKumar, Prabhu NG, Herman JJ, Tanimura T.  2018.  Sugar Intake Elicits Intelligent Searching Behavior in Flies and Honey Bees.. Front Behav Neurosci. 12:280.
Yapo C, Nair AG, Kotaleski JHellgren, Vincent P, Castro LRV.  2018.  Switch-like PKA responses in the nucleus of striatal neurons.. J Cell Sci.
Jain R, Brockmann A.  2018.  Time-restricted foraging under natural light/dark condition shifts the molecular clock in the honey bee, Apis mellifera.. Chronobiol Int. :1-12.
Aloysius A, DasGupta R, Dhawan J.  2018.  The transcription factor Lef1 switches partners from β-catenin to Smad3 during muscle stem cell quiescence.. Sci Signal. 11(540)
Louis LK, Gopurappilly R, Surendran H, Dutta S, Pal R.  2018.  Transcriptional profiling of human neural precursors post alcohol exposure reveals impaired neurogenesis via dysregulation of ERK signaling and miR-145.. J Neurochem. 146(1):47-62.
Mahajan S, Agashe D.  2018.  Translational selection for speed is not sufficient to explain variation in bacterial codon usage bias.. Genome Biol Evol.
Freeman SA, Vega A, Riedl M, Collins RF, Ostrowski PP, Woods EC, Bertozzi CR, Tammi MI, Lidke DS, Johnson P et al..  2018.  Transmembrane Pickets Connect Cyto- and Pericellular Skeletons Forming Barriers to Receptor Engagement.. Cell. 172(1-2):305-317.e10.
Agarwal I, Mahony S, Giri VB, Chaitanya R, Bauer AM.  2018.  Two new species of bent toed geckos, Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) from Northeast India with comments on name-bearing types from the region . ZOOTAXA. 4420 (3):334-356.
Agarwal I, Khandekar A, Ramakrishnan U, Vyas R, Giri VB.  2018.  Two new species of the Ophisops microlepis (Squamata: Lacertidae) complex from northwestern India with a key to Indian Ophisops . JOURNAL OF NATURAL HISTORY . 52(13-16):819-847.
Ser-Giacomi E, Zinger L, Malviya S, de Vargas C, Karsenti E, Bowler C, De Monte S.  2018.  Ubiquitous abundance distribution of non-dominant plankton across the global ocean.. Nat Ecol Evol.
Sure GReddy, Chatterjee A, Mishra N, Sabharwal V, Devireddy S, Awasthi A, Mohan S, Koushika SP.  2018.  UNC-16/JIP3 and UNC-76/FEZ1 limit the density of mitochondria in C. elegans neurons by maintaining the balance of anterograde and retrograde mitochondrial transport.. Sci Rep. 8(1):8938.
Chib S, Das S, Venkatesan S, Seshasayee ASN, Thattai M.  2018.  Using stochastic cell division and death to probe minimal units of cellular replication. New Journal of Physics. 20(035004)
Chib S, Das S, Venkatesan S, Seshasayee ASai Narain, Thattai M.  2018.  Using stochastic cell division and death to probe minimal units of cellular replication.. New J Phys. 20(3):035004.
Ramachandran P, Devarajan K.  2018.  ViXeN: An open‐source package for managing multimedia data. METHODS IN ECOLOGY AND EVOLUTION . 9(3):785-792.
Parchure A, Vyas N, Mayor S.  2018.  Wnt and Hedgehog: Secretion of Lipid-Modified Morphogens.. Trends Cell Biol. 28(2):157-170.
Diwan GD, Agashe D.  2018.  Wobbling forth and drifting back: The evolutionary history and impact of bacterial tRNA modifications.. Mol Biol Evol.
2017
Gower DJ, Kamei RG, Giri V, Wilkinson M.  2017.  On the absence of Ichthyophis sikkimensis Taylor, 1960 (Amphibia: Gymnophiona: Ichthyophiidae) in the Western Ghats of peninsular India. Herpetological Journal. 27(2):181-187.
Swaminathan V, Kalappurakkal JMathew, Mehta SB, Nordenfelt P, Moore TI, Koga N, Baker DA, Oldenbourg R, Tani T, Mayor S et al..  2017.  Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions.. Proc Natl Acad Sci U S A. 114(40):10648-10653.
Rahman MMostafizur, Kedia S, Fernandes G, Chattarji S.  2017.  Activation of the same mGluR5 receptors in the amygdala causes divergent effects on specific versus indiscriminate fear.. Elife. 6
Banerjee DSankar, Munjal A, Lecuit T, Rao M.  2017.  Actomyosin pulsation and flows in an active elastomer with turnover and network remodeling.. Nat Commun. 8(1):1121.
Arnold ML, Kunte K.  2017.  Adaptive Genetic Exchange: A Tangled History of Admixture and Evolutionary Innovation.. Trends Ecol Evol.
Karkarey R, Zambre A, Isvaran K, Arthur R.  2017.  Alternative reproductive tactics and inverse size-assortment in a high-density fish spawning aggregation.. BMC Ecol. 17(1):10.
Nandwani N, Surana P, Udgaonkar JB, Das R, Gosavi S.  2017.  Amino-acid composition after loop deletion drives domain swapping.. Protein Sci. 26(10)
Raghavender USurya.  2017.  Analysis of Residue Conformations in Peptides in CSD and Protein-peptide Structural Complexes.. Chem Biol Drug Des.
Das S, Singh RRaj, Shivaprasad PV.  2017.  Artificial Induction and Maintenance of Epigenetic Variations in Plants. Plant Gene Silencing: Mechanisms and Applications. :59-75.
Mirza ZA, Patel H.  2017.  Back from the dead! Resurrection and revalidation of the Indian endemic snake genus Wallophis Werner, 1929 (Squamata: Colubridae) insights from molecular data.. Mitochondrial DNA A DNA Mapp Seq Anal. :1-7.
Wordley CFR, Sankaran M, Mudappa D, Altringham JD.  2017.  Bats in the Ghats: Agricultural intensification reduces functional diversity and increases trait filtering in a biodiversity hotspot in India. Biological Conservation. 210:48-55.
Dey S, Delampady M, Parameshwaran R, N Kumar S, Srivathsa A, Karanth U.  2017.  Bayesian Methods for Estimating Animal Abundance at Large Spatial Scales Using Data from Multiple Sources. Journal of Agricultural, Biological and Environmental Statistics. 22(2):111–139.
Jumani S, Rao S, Machado S, Prakash A.  2017.  Big concerns with small projects: Evaluating the socio-ecological impacts of small hydropower projects in India.. Ambio.
Ghosh P, Sowdhamini R.  2017.  Bioinformatics comparisons of RNA-binding proteins of pathogenic and non-pathogenic Escherichia coli strains reveal novel virulence factors.. BMC Genomics. 18(1):658.
Chanam J, Borges RM.  2017.  Cauline domatia of the ant-plant Humboldtia brunonis (Fabaceae). FLORA. 236-237
Ladher RK.  2017.  Changing shape and shaping change: Inducing the inner ear.. Semin Cell Dev Biol. 65:39-46.
Yadahalli S, Li J, Lane DP, Gosavi S, Verma CS.  2017.  Characterizing the conformational landscape of MDM2-binding p53 peptides using Molecular Dynamics simulations.. Sci Rep. 7(1):15600.
Malhotra P, Jethva PN, Udgaonkar JB.  2017.  Chemical Denaturants Smoothen Ruggedness on the Free Energy Landscape of Protein Folding.. Biochemistry. 56(31):4053-4063.
Ramachandran V, Robin VV, Tamma K, Ramakrishnan U.  2017.  Climatic and geographic barriers drive distributional patterns of bird phenotypes within peninsular India. Journal of Avian Biology. 48(5):620-630.
Javali A, Misra A, Leonavicius K, Acharya D, Vyas B, Sambasivan R.  2017.  Co-expression of Tbx6 and Sox2 identifies a novel transient neuromesoderm progenitor cell state.. Development.
Griffith DM, Lehmann CER, Strömberg CAE, Parr CL, R Pennington T, Sankaran M, Ratnam J, Still CJ, Powell RL, Hanan NP et al..  2017.  Comment on "The extent of forest in dryland biomes".. Science. 358(6365)
Karpe SD, Dhingra S, Brockmann A, Sowdhamini R.  2017.  Computational genome-wide survey of odorant receptors from two solitary bees Dufourea novaeangliae (Hymenoptera: Halictidae) and Habropoda laboriosa (Hymenoptera: Apidae).. Sci Rep. 7(1):10823.
Chakrabarti KS, Li J, Das R, R Byrd A.  2017.  Conformational Dynamics and Allostery in E2:E3 Interactions Drive Ubiquitination: gp78 and Ube2g2.. Structure.
Natesh M, Atla G, Nigam P, Jhala YV, Zachariah A, Borthakur U, Ramakrishnan U.  2017.  Conservation priorities for endangered Indian tigers through a genomic lens.. Sci Rep. 7(1):9614.
Hasan G.  2017.  Control of protein translation by IP3R-mediated Ca(2+) release in Drosophila neuroendocrine cells.. Fly (Austin).
Pathak T, Trivedi D, Hasan G.  2017.  CRISPR-Cas-Induced Mutants Identify a Requirement for dSTIM in Larval Dopaminergic Cells of Drosophila melanogaster.. G3 (Bethesda). 7(3):923-933.
Bindal G, Krishnamurthi R, Seshasayee ASai Narain, Rath D.  2017.  CRISPR-Cas-Mediated Gene Silencing Reveals RacR To Be a Negative Regulator of YdaS and YdaT Toxins in Escherichia coli K-12.. mSphere. 2(6)
Bansal D, Kulkarni J, Nadahalli K, Lakshmanan V, Krishna S, Sasidharan V, Geo J, Dilipkumar S, Pasricha R, Gulyani A et al..  2017.  Cytoplasmic poly (A) binding protein (PABPC2) critically regulates epidermal maintenance and turnover in planarian Schmidtea mediterranea.. Development.
Caicedo JC, Cooper S, Heigwer F, Warchal S, Qiu P, Molnar C, Vasilevich AS, Barry JD, Bansal HSingh, Kraus O et al..  2017.  Data-analysis strategies for image-based cell profiling.. Nat Methods. 14(9):849-863.
Hudson LN, Newbold T, Contu S, Hill SLL, Kumar A.  2017.  The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project. Ecology and Evolution. 7(1):145-188.
Mirza ZA.  2017.   Description of a new species of Liocheles Sundevall, 1833 (Hormuridae) from India. Zootaxa. 4365(2):217-230.
Mirza ZA.  2017.  Description of a new species of Liocheles Sundevall, 1833 (Hormuridae) from India.. Zootaxa. 4365(2):217-230.
Mukherjee S, Dohno C, Nakatani K.  2017.  Design and Synthesis of Cyclic Mismatch-Binding Ligands (CMBLs) with Variable Linkers by Ring-Closing Metathesis and their Photophysical and DNA Repeat Binding Properties.. Chemistry. 23(47):11385-11396.
Yapo C, Nair AG, Clement L, Castro LR, Kotaleski JHellgren, Vincent P.  2017.  Detection of phasic dopamine by D1 and D2 striatal medium spiny neurons.. J Physiol.
Jabir MV, N Chaitanya A, Mathew M, Samanta GK.  2017.  Direct transfer of classical non-separable states into hybrid entangled two photon states.. Sci Rep. 7(1):7331.
Nordenfelt P, Moore TI, Mehta SB, Kalappurakkal JMathew, Swaminathan V, Koga N, Lambert TJ, Baker D, Waters JC, Oldenbourg R et al..  2017.  Direction of actin flow dictates integrin LFA-1 orientation during leukocyte migration.. Nat Commun. 8(1):2047.
Shukla A, Bhattacharyya A, Kuppusamy L, Srivas M, Thattai M.  2017.  Discovering vesicle traffic network constraints by model checking.. PLoS One. 12(7):e0180692.
Taylor MJ, Husain K, Gartner ZJ, Mayor S, Vale RD.  2017.  A DNA-Based T Cell Receptor Reveals a Role for Receptor Clustering in Ligand Discrimination.. Cell. 169(1):108-119.e20.
Iyengar SB, Sumanta B., Barua D, Mishra C, Sankaran M.  2017.  A dominant dwarf shrub increases diversity of herbaceous plant communities in a Trans-Himalayan rangeland. Plant Ecology. 218(7):843–854.
Gunage RD, Dhanyasi N, Reichert H, VijayRaghavan K.  2017.  Drosophila adult muscle development and regeneration.. Semin Cell Dev Biol.
Sen S, Goluguri RReddy, Udgaonkar JB.  2017.  A Dry Transition State More Compact Than the Native State Is Stabilized by Non-Native Interactions during the Unfolding of a Small Protein.. Biochemistry.
Khan I, Agashe D, Rolff J.  2017.  Early-life inflammation, immune response and ageing.. Proc Biol Sci. 284(1850)
Sowdhamini R, Mizuguchi K.  2017.  Editorial-Sequences and topology.. Curr Opin Struct Biol.
Husain K, Rao M.  2017.  Emergent Structures in an Active Polar Fluid: Dynamics of Shape, Scattering, and Merger.. Phys Rev Lett. 118(7):078104.
Sane SP.  2017.  Eppur si vola (and yet it flies).. J Exp Biol. 220(Pt 4):514-516.
Joshi J, Prakash A, Kunte K.  2017.  Evolutionary Assembly of Communities in Butterfly Mimicry Rings.. Am Nat. 189(4):E58-E76.
Khan I, Prakash A, Agashe D.  2017.  Experimental evolution of insect immune memory versus pathogen resistance.. Proc Biol Sci. 284(1869)
Sengupta I, Udgaonkar JB.  2017.  Expression and purification of single cysteine-containing mutant variants of the mouse prion protein by oxidative refolding.. Protein Expr Purif.
Thutupalli S, Uppaluri S, Constable GWA, Levin SA, Stone HA, Tarnita CE, Brangwynne CP.  2017.  Farming and public goods production in Caenorhabditis elegans populations.. Proc Natl Acad Sci U S A. 114(9):2289-2294.
Sabareesan AThody, Udgaonkar JB.  2017.  The G126V Mutation in the Mouse Prion Protein Hinders Nucleation-Dependent Fibril Formation by Slowing Initial Fibril Growth and by Increasing the Critical Concentration.. Biochemistry. 56(44):5931-5942.
Parveen S, Panicker MM, Gupta PKumar.  2017.  Generation of an induced pluripotent stem cell line from chorionic villi of a Turner syndrome spontaneous abortion.. Stem Cell Res. 19:12-16.
Patel RP, Wutke S, Lenz D, Mukherjee S, Ramakrishnan U, Veron G, Fickel J, Wilting A, Förster DW.  2017.  Genetic Structure and Phylogeography of the Leopard Cat (Prionailurus bengalensis) Inferred from Mitochondrial Genomes.. J Hered. 108(4):349-360.
Dahal N, Lissovsky AA, Lin Z, Solari K, Hadly EA, Zhan X, Ramakrishnan U.  2017.  Genetics, morphology and ecology reveal a cryptic pika lineage in the Sikkim Himalaya.. Mol Phylogenet Evol. 106:55-60.
Chib S, Ali F, Seshasayee ASai Narain.  2017.  Genomewide Mutational Diversity in Escherichia coli Population Evolving in Prolonged Stationary Phase.. mSphere. 2(3)
Hsu JL, Crawford JChase, Tammone MN, Ramakrishnan U, Lacey EA, Hadly EA.  2017.  Genomic data reveal a loss of diversity in two species of tuco-tucos (genus Ctenomys) following a volcanic eruption.. Sci Rep. 7(1):16227.
Bangalore MPrakash, Adhikarla S, Mukherjee O, Panicker MM.  2017.  Genotoxic Effects of Culture Media on Human Pluripotent Stem Cells.. Sci Rep. 7:42222.
Mandal R, Bhuyan PJyoti, Chaudhuri P, Rao M, Dasgupta C.  2017.  Glassy swirls of active dumbbells.. Phys Rev E. 96(4-1):042605.
Badrinarayanan A, Le TBK, Spille J-H, Cisse II, Laub MT.  2017.  Global analysis of double-strand break processing reveals in vivo properties of the helicase-nuclease complex AddAB.. PLoS Genet. 13(5):e1006783.
Narayan A, Campos LA, Bhatia S, Fushman D, Naganathan AN.  2017.  Graded Structural Polymorphism in a Bacterial Thermosensor Protein.. J Am Chem Soc. 139(2):792-802.
Dorazio RM, K Karanth U.  2017.  A hierarchical model for estimating the spatial distribution and abundance of animals detected by continuous-time recorders.. PLoS One. 12(5):e0176966.
Shettigar N, Joshi A, Dalmeida R, Gopalkrishna R, Chakravarthy A, Patnaik S, Mathew M, Palakodeti D, Gulyani A.  2017.  Hierarchies in light sensing and dynamic interactions between ocular and extraocular sensory networks in a flatworm.. Sci Adv. 3(7):e1603025.
Ramachandran R, Kumar A, Sundar KSGopi, Bhalla RSingh.  2017.  Hunting or habitat? Drivers of waterbird abundance and community structure in agricultural wetlands of southern India. Ambio.
Chaturvedi D, Reichert H, Gunage RD, VijayRaghavan K.  2017.  Identification and functional characterization of muscle satellite cells in Drosophila.. Elife. 6
Moulick R, Udgaonkar JB.  2017.  Identification and structural characterization of the precursor conformation of the prion protein which directly initiates misfolding and oligomerization.. J Mol Biol.
Cha DH, Olsson SB, Yee WL, Goughnour RB, Hood GR, Mattsson M, Schwarz D, Feder JL, Linn CE.  2017.  Identification of Host Fruit Volatiles from Snowberry (Symphoricarpos albus), Attractive to Rhagoletis zephyria Flies from the Western United States.. J Chem Ecol.
Suryawanshi KR, Redpath SM, Bhatnagar YVeer, Ramakrishnan U, Chaturvedi V, Smout SC, Mishra C.  2017.  Impact of wild prey availability on livestock predation by snow leopards.. R Soc Open Sci. 4(6):170026.
Sinha V, Goyal A, Svenningsen SL, Semsey S, Krishna S.  2017.  In silico Evolution of Lysis-Lysogeny Strategies Reproduces Observed Lysogeny Propensities in Temperate Bacteriophages.. Front Microbiol. 8:1386.
Nordström K, Dahlbom J, Pragadheesh VS, Ghosh S, Olsson A, Dyakova O, Suresh SKrishna, Olsson SB.  2017.  In situ modeling of multimodal floral cues attracting wild pollinators across environments.. Proc Natl Acad Sci U S A.
Barron HC, Vogels TP, Behrens TE, Ramaswami M.  2017.  Inhibitory engrams in perception and memory.. Proc Natl Acad Sci U S A.
Mahita J, Sowdhamini R.  2017.  Integrative modelling of TIR domain-containing adaptor molecule inducing interferon-β (TRIF) provides insights into its autoinhibited state.. Biol Direct. 12(1):9.
Toniolo C, Crisma M, Formaggio F, Alemán C, Ramakrishnan C, Kalmankar N, Balaram P.  2017.  Intramolecular Backbone···Backbone Hydrogen Bonds in Polypeptide Conformations. The Other Way Around: ε-Turn.. Biopolymers. 108(1)
Megha M, Hasan G.  2017.  IP3R mediated Ca(2+) release regulates protein metabolism in Drosophila neuroendocrine cells: implications for development under nutrient stress.. Development.
Panthi S, Khanal G, Acharya KPrasad, Aryal A, Srivathsa A.  2017.  Large anthropogenic impacts on a charismatic small carnivore: Insights from distribution surveys of red panda Ailurus fulgens in Nepal.. PLoS One. 12(7):e0180978.
Kshettry A, Vaidyanathan S, Athreya V.  2017.  Leopard in a tea-cup: A study of leopard habitat-use and human-leopard interactions in north-eastern India.. PLoS One. 12(5):e0177013.
Janakiraman D.  2017.  Lévy flights in the presence of a point sink of finite strength.. Phys Rev E. 95(1-1):012154.

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