//genesis // kkit Version 8 flat dumpfile // Saved on Fri Aug 1 23:47:51 2003 include kkit {argv 1} FASTDT = 0.0001 SIMDT = 0.005 CONTROLDT = 10 PLOTDT = 10 MAXTIME = 1114 TRANSIENT_TIME = 2 VARIABLE_DT_FLAG = 1 DEFAULT_VOL = 2e-08 VERSION = 8.0 setfield /file/modpath value /home2/bhalla/scripts/modules kparms //genesis initdump -version 3 -ignoreorphans 1 simobjdump table input output alloced step_mode stepsize x y z simobjdump xtree path script namemode sizescale simobjdump xcoredraw xmin xmax ymin ymax simobjdump xtext editable simobjdump xgraph xmin xmax ymin ymax overlay simobjdump xplot pixflags script fg ysquish do_slope wy simobjdump group xtree_fg_req xtree_textfg_req plotfield expanded movealone \ link savename file version md5sum mod_save_flag x y z simobjdump kpool CoTotal CoInit Co n nInit nTotal nMin vol slave_enable notes \ xtree_fg_req xtree_textfg_req x y z simobjdump kreac kf kb notes xtree_fg_req xtree_textfg_req x y z simobjdump kenz CoComplexInit CoComplex nComplexInit nComplex vol k1 k2 k3 \ keepconc usecomplex notes xtree_fg_req xtree_textfg_req link x y z simobjdump stim level1 width1 delay1 level2 width2 delay2 baselevel trig_time \ trig_mode notes xtree_fg_req xtree_textfg_req is_running x y z simobjdump xtab input output alloced step_mode stepsize notes editfunc \ xtree_fg_req xtree_textfg_req baselevel last_x last_y is_running x y z simobjdump kchan perm gmax Vm is_active use_nernst notes xtree_fg_req \ xtree_textfg_req x y z simobjdump proto x y z simobjdump linkinfo xtree_fg_req xtree_textfg_req uplink downlink x y z simobjdump uplink xtree_fg_req xtree_textfg_req x y z simobjdump downlink xtree_fg_req xtree_textfg_req x y z simobjdump mirror notes xtree_fg_req x y z simundump group /kinetics/luciferase 0 yellow black x 0 0 "" x؏`ݎ \ /home2/bhalla/scripts/modules/x؏`ݎ_0.g 0 0 0 29 -20 0 simundump kpool /kinetics/luciferase/E.S1_in 0 0 0 8.8762e-12 106.51 0 0 0 \ 1.2e+13 0 "" blue yellow 23 -20 0 simundump kreac /kinetics/luciferase/k5 0 2.6e-05 0 "" white yellow 23 -22 0 simundump kpool /kinetics/luciferase/E.S1 0 0 0 2.7491e-10 3298.9 0 0 0 \ 1.2e+13 0 "" blue yellow 23 -24 0 simundump kpool /kinetics/luciferase/S1 0 1e+05 0.00284 0.002356 2.8272e+10 \ 3.408e+10 1.2e+18 0 1.2e+13 0 "" blue yellow 23 -26 0 simundump kreac /kinetics/luciferase/k1 0 1.6667e-15 6 "" white yellow 21 -25 \ 0 simundump kpool /kinetics/luciferase/E 0 10 0.01 0.00019528 2.3433e+09 \ 1.2e+11 1.2e+14 0 1.2e+13 0 "" 54 yellow 19 -26 0 simundump kreac /kinetics/luciferase/k1_prime 0 8.3335e-14 10 "" white yellow \ 25 -25 0 simundump kpool /kinetics/luciferase/S2 0 1000 500 499.99 5.9999e+15 6e+15 \ 1.2e+16 0 1.2e+13 0 "" blue yellow 27 -25 0 simundump kreac /kinetics/luciferase/k4 0 0.09 8.3335e-14 "" white yellow 35 \ -22 0 simundump kpool /kinetics/luciferase/E.S1.S2 0 0 0 1.299e-08 1.5588e+05 0 0 0 \ 1.2e+13 0 "" 26 yellow 27 -26 0 simundump kreac /kinetics/luciferase/k2 0 30 0 "" white yellow 29 -26 0 simundump kpool /kinetics/luciferase/E.P1 0 0 0 3.8971e-08 4.6765e+05 0 0 0 \ 1.2e+13 0 "" 1 yellow 31 -26 0 simundump kreac /kinetics/luciferase/k3 0 10 0 "" white yellow 33 -26 0 simundump kpool /kinetics/luciferase/E.P 0 0 0 5.3469e-06 6.4163e+07 0 0 0 \ 1.2e+13 0 "" 58 yellow 35 -26 0 simundump kpool /kinetics/luciferase/P 0 0 0 0.00047679 5.7215e+09 0 0 0 \ 1.2e+13 0 "" blue yellow 37 -26 0 simundump kreac /kinetics/luciferase/k1_prime_2 0 8.3335e-14 10 "" white \ yellow 21 -27 0 simundump kreac /kinetics/luciferase/k1_2 0 1.6667e-15 6 "" white yellow 25 \ -27 0 simundump kpool /kinetics/luciferase/E.S2 0 0 0 0.0097638 1.1717e+11 0 0 0 \ 1.2e+13 0 "" 47 yellow 23 -28 0 simundump kpool /kinetics/luciferase/AMP 0 0 0 0.00048395 5.8074e+09 0 0 0 \ 1.2e+13 0 "" blue yellow 29 -28 0 simundump kpool /kinetics/luciferase/photon 0 0 0 0.00048391 5.8069e+09 0 0 0 \ 1.2e+13 0 "" blue yellow 33 -28 0 simundump kreac /kinetics/luciferase/k5_2 0 2.6e-05 0 "" white yellow 19 -30 \ 0 simundump kreac /kinetics/luciferase/k5_3 0 2.6e-05 0 "" white yellow 23 -30 \ 0 simundump kreac /kinetics/luciferase/k5_4 0 2.6e-05 0 "" white yellow 27 -30 \ 0 simundump kpool /kinetics/luciferase/num_photons 0 0 0 5.8069e+09 5.8069e+09 \ 0 5.8069e+09 0 1 0 "" 62 yellow 30 -30 0 simundump kpool /kinetics/luciferase/PMT_count 0 0 0 1.8023e+07 5.8069e+09 0 \ 5.8069e+09 0 322.2 0 "" 51 yellow 33 -30 0 simundump kreac /kinetics/luciferase/k6 0 0.0003 0 "" white yellow 35 -30 0 simundump kpool /kinetics/luciferase/E.P_in 0 0 0 1.7682e-06 2.1218e+07 0 0 0 \ 1.2e+13 0 "" blue yellow 35 -32 0 simundump kpool /kinetics/luciferase/E.S1.S2_in 0 0 0 4.1942e-10 5033.1 0 0 0 \ 1.2e+13 0 "" blue yellow 27 -32 0 simundump kpool /kinetics/luciferase/E.S2_in 0 0 0 0.00028673 3.4407e+09 0 0 \ 0 1.2e+13 0 "" blue yellow 23 -32 0 simundump kpool /kinetics/luciferase/E_in 0 0 0 5.7351e-06 6.8822e+07 0 0 0 \ 1.2e+13 0 "" blue yellow 19 -32 0 simundump xtab /kinetics/xtab 0 -20 14605 1 2 0 "" edit_xtab white red 0 0 0 \ 0 25.791 -17.623 0 loadtab /kinetics/xtab table 0 1114 0 1114 \ 18059 18008.9 17958.9 17908.8 17858.7 17808.7 17761.8 17786.7 17811.6 \ 17836.5 17861.5 17886.4 17910 17919.8 17929.7 17939.5 17949.4 17959.3 \ 17964.9 17942 17919.1 17896.1 17873.2 17850.3 17832.1 17837.2 17842.3 \ 17847.3 17852.4 17857.5 17862.2 17866 17869.7 17873.5 17877.2 17881 17883.7 \ 17883.5 17883.3 17883.1 17882.9 17882.7 17886.9 17901.6 17916.2 17930.8 \ 17945.4 17960.1 17965.2 17952 17938.8 17925.6 17912.4 17899.2 17887.7 17879 \ 17870.3 17861.5 17852.8 17844 17827.5 17800.6 17773.6 17746.7 17719.7 \ 17692.7 17680.8 17685.8 17690.8 17695.7 17700.7 17705.7 17697.7 17677.4 \ 17657.1 17636.8 17616.5 17596.2 17580.1 17567.5 17554.9 17542.3 17529.7 \ 17517.1 17522.4 17539.5 17556.7 17573.9 17591 17608.2 17612 17608.2 17604.5 \ 17600.8 17597 17593.3 17588.2 17582.5 17576.8 17571.1 17565.4 17559.6 \ 17557.3 17556.1 17555 17553.8 17552.7 17551.5 17558.6 17568.1 17577.7 \ 17587.2 17596.8 17606.3 17615.4 17624.3 17633.3 17642.3 17651.2 17660.2 \ 17628.2 17589.4 17550.5 17511.7 17472.8 17433.9 17424.3 17418 17411.6 \ 17405.3 17398.9 17392.6 17403.5 17415.5 17427.4 17439.4 17451.4 17463.4 \ 17450.1 17436.4 17422.6 17408.9 17395.2 17381.6 17372.2 17362.8 17353.4 \ 17344 17334.6 17326.5 17335.3 17344.1 17352.9 17361.7 17370.6 17377.9 \ 17373.8 17369.7 17365.6 17361.5 17357.4 17351.9 17339.2 17326.4 17313.7 \ 17300.9 17288.2 17282.4 17305.3 17328.1 17350.9 17373.7 17396.5 17414.1 \ 17415.1 17416.1 17417.2 17418.2 17419.3 17415.6 17400 17384.4 17368.9 \ 17353.3 17337.7 17321.5 17304.1 17286.8 17269.4 17252 17234.6 17218.8 \ 17205.9 17193 17180.1 17167.2 17154.2 17149.4 17156.2 17163 loadtab -continue \ 17169.8 17176.5 17183.3 17189 17193.3 17197.6 17201.9 17206.2 17210.6 \ 17206.8 17194.9 17183.1 17171.2 17159.3 17147.4 17151.8 17170.1 17188.3 \ 17206.6 17224.8 17243.1 17264.9 17289.2 17313.5 17337.9 17362.2 17386.6 \ 17383.7 17364.5 17345.4 17326.2 17307.1 17287.9 17266.8 17244.6 17222.4 \ 17200.2 17178.1 17155.9 17144.7 17138.1 17131.4 17124.7 17118.1 17111.4 \ 17097 17080 17063.1 17046.2 17029.2 17012.3 16977.4 16937.8 16898.3 16858.8 \ 16819.3 16779.8 16786.6 16802.3 16817.9 16833.6 16849.2 16864.9 16875 \ 16884.4 16893.8 16903.1 16912.5 16921.9 16952.1 16984 17015.9 17047.8 \ 17079.7 17111.6 17093.9 17074.6 17055.4 17036.1 17016.8 16997.6 16990.4 \ 16983.2 16976.1 16968.9 16961.7 16952.9 16915.2 16877.5 16839.7 16802 \ 16764.3 16734.6 16779.7 16824.9 16870 16915.2 16960.3 16997.1 16981.7 \ 16966.3 16950.9 16935.5 16920.1 16902.1 16872.1 16842.2 16812.2 16782.3 \ 16752.3 16736.5 16769.6 16802.7 16835.9 16869 16902.1 16920.7 16899.3 \ 16877.9 16856.5 16835.1 16813.7 16790.8 16764.5 16738.1 16711.8 16685.4 \ 16659.1 16647.3 16662.1 16676.8 16691.6 16706.4 16721.2 16720.3 16695.5 \ 16670.6 16645.8 16621 16596.2 16590.7 16609.7 16628.8 16647.9 16667 16686.1 \ 16696.5 16697.6 16698.7 16699.8 16700.8 16701.9 16701 16698.4 16695.7 16693 \ 16690.4 16687.7 16692.2 16702.1 16711.9 16721.8 16731.7 16741.6 16755.9 \ 16773 16790.1 16807.3 16824.4 16841.5 16801.4 16730.9 16660.4 16589.9 \ 16519.4 16448.9 16450.4 16483.4 16516.4 16549.4 16582.4 16615.4 16590.9 \ 16546 16501 16456.1 16411.2 16366.2 16383.4 16418 16452.6 16487.2 16521.8 \ 16556.4 16570.2 16579.6 16588.9 16598.3 16607.7 16617 loadtab -continue \ 16609.5 16599.4 16589.2 16579.1 16569 16558.8 16555.9 16553.7 16551.5 \ 16549.3 16547.1 16544.8 16536.1 16527 16518 16508.9 16499.9 16490.8 16491.3 \ 16491.9 16492.5 16493 16493.6 16493.1 16464.1 16435.1 16406.2 16377.2 \ 16348.2 16321.8 16324.7 16327.6 16330.5 16333.4 16336.3 16338.7 16337.2 \ 16335.8 16334.3 16332.9 16331.4 16332.2 16344.2 16356.2 16368.2 16380.2 \ 16392.2 16396.2 16369.6 16343.1 16316.5 16290 16263.4 16243.5 16243.2 16243 \ 16242.7 16242.5 16242.2 16242.1 16242.4 16242.8 16243.1 16243.5 16243.8 \ 16237.5 16217.9 16198.4 16178.8 16159.3 16139.7 16144.8 16190.1 16235.4 \ 16280.7 16326 16371.3 16401.9 16412.4 16422.9 16433.3 16443.8 16454.3 \ 16443.4 16408.1 16372.8 16337.5 16302.2 16266.9 16239.5 16219.7 16200 \ 16180.3 16160.6 16140.9 16124.4 16110.6 16096.8 16083 16069.2 16055.4 \ 16053.4 16059.5 16065.5 16071.6 16077.6 16083.7 16110 16148 16185.9 16223.8 \ 16261.7 16299.7 16300.7 16284.2 16267.8 16251.3 16234.9 16218.4 16201.3 \ 16184.1 16166.8 16149.5 16132.2 16114.9 16116.5 16123.9 16131.3 16138.7 \ 16146.1 16153.6 16130.3 16099.7 16069.2 16038.6 16008 15977.4 16010 16053.6 \ 16097.2 16140.9 16184.5 16228.1 16210.1 16184.6 16159.2 16133.7 16108.3 \ 16082.8 16084.4 16087.9 16091.3 16094.7 16098.2 16101.6 16080 16057.8 \ 16035.6 16013.5 15991.3 15970 15989 16008.1 16027.2 16046.2 16065.3 16082.4 \ 16072.2 16061.9 16051.6 16041.3 16031 16021.6 16019.8 16018.1 16016.3 \ 16014.5 16012.7 16010.6 16006 16001.4 15996.8 15992.3 15987.7 15978.3 15949 \ 15919.6 15890.3 15860.9 15831.6 15807.2 15799.1 15791 15782.9 15774.8 \ 15766.7 15769.7 15801.7 15833.6 15865.5 loadtab -continue \ 15897.5 15929.4 15946.6 15932.6 15918.6 15904.6 15890.6 15876.6 15866.9 \ 15864.8 15862.8 15860.7 15858.7 15856.6 15843.7 15815 15786.3 15757.6 \ 15728.9 15700.2 15679.4 15668.3 15657.3 15646.2 15635.2 15624.1 15637.6 \ 15676.5 15715.5 15754.4 15793.3 15832.2 15836.3 15810.1 15783.9 15757.7 \ 15731.4 15705.2 15691.6 15687.1 15682.7 15678.3 15673.9 15669.4 15671.8 \ 15678.5 15685.1 15691.7 15698.3 15704.9 15700.2 15689.8 15679.4 15668.9 \ 15658.5 15648.1 15639.9 15632.6 15625.4 15618.1 15610.9 15603.6 15594.4 \ 15584.6 15574.8 15565 15555.1 15545.3 15552.8 15564.9 15576.9 15589 15601.1 \ 15613.1 15652 15696.3 15740.5 15784.8 15829 15873.2 15836.9 15789.3 15741.6 \ 15694 15646.4 15598.8 15623.4 15654.3 15685.2 15716 15746.9 15777.8 15800.5 \ 15822.9 15845.3 15867.7 15890.1 15912 15842 15772 15702 15632 15562 15497.7 \ 15545.3 15592.8 15640.4 15687.9 15735.5 15776.2 15748.7 15721.1 15693.5 \ 15666 15638.4 15609.1 15568.6 15528 15487.5 15446.9 15406.4 15376.3 15395.3 \ 15414.3 15433.2 15452.2 15471.1 15490.4 15511 15531.5 15552.1 15572.7 \ 15593.2 15601.8 15576.7 15551.5 15526.3 15501.2 15476 15462.8 15476.6 \ 15490.4 15504.2 15518 15531.8 15532.2 15507.6 15483 15458.4 15433.7 15409.1 \ 15403.2 15426.3 15449.5 15472.7 15495.9 15519 15524.9 15508.1 15491.3 \ 15474.5 15457.6 15440.8 15433.1 15435.5 15437.8 15440.1 15442.4 15444.8 \ 15442.9 15437.1 15431.3 15425.5 15419.7 15413.9 15408.4 15402.9 15397.5 \ 15392 15386.6 15381.1 15389.5 15407 15424.5 15441.9 15459.4 15476.8 15466 \ 15439.7 15413.5 15387.2 15360.9 15334.7 15340.3 15360.2 15380.1 15400.1 \ 15420 15440 15409.7 loadtab -continue \ 15361.1 15312.5 15263.9 15215.3 15166.7 15192.8 15240.5 15288.3 15336.1 \ 15383.8 15431.6 15410.9 15374.9 15338.9 15303 15267 15231.1 15240.6 15257.4 \ 15274.3 15291.1 15308 15324.8 15300.1 15270.9 15241.7 15212.5 15183.4 \ 15154.2 15173.5 15195.7 15217.8 15239.9 15262 15284.1 15253.3 15222 15190.6 \ 15159.3 15127.9 15097.7 15100.7 15103.7 15106.6 15109.6 15112.6 15115.5 \ 15117.2 15119 15120.7 15122.5 15124.3 15127.1 15138.1 15149.1 15160.1 \ 15171.1 15182.1 15187.6 15164.1 15140.7 15117.2 15093.8 15070.3 15053.6 \ 15063.3 15073.1 15082.9 15092.7 15102.4 15115 15136.2 15157.4 15178.7 \ 15199.9 15221.1 15236.6 15237.8 15239.1 15240.4 15241.6 15242.9 15226.6 \ 15174.8 15123 15071.3 15019.5 14967.7 14945.7 14973.4 15001.1 15028.8 \ 15056.5 15084.2 15106.9 15122.7 15138.5 15154.3 15170.1 15186 15180 15148.4 \ 15116.8 15085.2 15053.6 15022.1 15011.7 15022.4 15033.1 15043.8 15054.5 \ 15065.1 15064.1 15053.3 15042.6 15031.8 15021 15010.2 15010.9 15019.6 \ 15028.3 15037.1 15045.8 15054.5 15057.3 15056.7 15056.1 15055.5 15054.8 \ 15054.2 15037.9 15014.1 14990.3 14966.5 14942.6 14918.8 14928.2 14950.7 \ 14973.2 14995.6 15018.1 15040.6 15027.9 15004.1 14980.2 14956.4 14932.5 \ 14908.7 14904.2 14904.4 14904.7 14905 14905.3 14905.5 14907.4 14909.5 \ 14911.6 14913.7 14915.8 14918 14914.1 14909.5 14904.9 14900.3 14895.7 \ 14891.1 14909.8 14930.3 14950.8 14971.3 14991.8 15012.3 15032.1 15052 \ 15071.9 15091.7 15111.6 15130.4 15081.1 15031.8 14982.6 14933.3 14884 \ 14838.2 14846.9 14855.6 14864.4 14873.1 14881.9 14887.9 14870.4 14853 \ 14835.5 14818 14800.5 14786.3 14791.6 14796.9 14802.1 14807.4 loadtab -continue \ 14812.6 14819.9 14835.7 14851.6 14867.5 14883.3 14899.2 14911.3 14911.1 \ 14910.8 14910.5 14910.3 14910 14902.5 14875.5 14848.6 14821.6 14794.7 \ 14767.7 14742.7 14721.7 14700.8 14679.8 14658.9 14637.9 14635.4 14665.9 \ 14696.4 14726.9 14757.4 14787.8 14802.6 14794 14785.4 14776.8 14768.2 \ 14759.6 14753.7 14751.4 14749 14746.7 14744.3 14742 14742.1 14744.9 14747.8 \ 14750.6 14753.4 14756.3 14755.8 14752.3 14748.9 14745.5 14742 14738.6 \ 14736.8 14736.2 14735.6 14735 14734.4 14733.8 14723.1 14706.1 14689.1 \ 14672.1 14655 14638 14634.5 14638 14641.5 14645 14648.5 14652 14658.3 \ 14665.8 14673.3 14680.8 14688.3 14695.8 14725 14761.6 14798.3 14834.9 \ 14871.6 14908.2 14879.6 14833.1 14786.7 14740.3 14693.8 14647.4 14629.3 \ 14617 14604.7 14592.4 14580 14567.7 14558.3 14549.3 14540.2 14531.2 14522.2 \ 14513.2 14539.8 14569.8 14599.7 14629.7 14659.7 14689.6 14681.9 14672.5 \ 14663.2 14653.8 14644.4 14635 simundump xgraph /graphs/conc1 0 0 1114 14000 18031 0 simundump xgraph /graphs/conc2 0 0 1114 0 0.015347 0 simundump xplot /graphs/conc1/PMT_count.Co 3 524288 \ "delete_plot.w ; edit_plot.D " 51 0 1 1 simundump xplot /graphs/conc1/xtab.output 3 524288 \ "delete_plot.w ; edit_plot.D " white 0 0 1 simundump xplot /graphs/conc2/mRNA.Co 3 524288 \ "delete_plot.w ; edit_plot.D " blue 0 0 1 simundump xplot /graphs/conc2/E.Co 3 524288 \ "delete_plot.w ; edit_plot.D " 54 0 0 1 simundump xgraph /moregraphs/conc3 0 -1 1114 0 9.7826e-06 0 simundump xgraph /moregraphs/conc4 0 0 1114 0 5e-08 0 simundump xcoredraw /edit/draw 0 17 39 -34 -15.623 simundump xtree /edit/draw/tree 0 \ /kinetics/#[],/kinetics/#[]/#[],/kinetics/#[]/#[]/#[][TYPE!=proto],/kinetics/#[]/#[]/#[][TYPE!=linkinfo]/##[] \ "edit_elm.D ; drag_from_edit.w " auto 0.6 simundump xtext /file/notes 0 1 xtextload /file/notes \ "Input rate at translation is = 0.00016" \ "" \ "Based on B_binding6.g." \ "Fixed dumping of location of transporters." \ "" addmsg /kinetics/luciferase/k5 /kinetics/luciferase/E.S1_in REAC B A addmsg /kinetics/luciferase/E.S1 /kinetics/luciferase/k5 SUBSTRATE n addmsg /kinetics/luciferase/E.S1_in /kinetics/luciferase/k5 PRODUCT n addmsg /kinetics/luciferase/k5 /kinetics/luciferase/E.S1 REAC A B addmsg /kinetics/luciferase/k1 /kinetics/luciferase/E.S1 REAC B A addmsg /kinetics/luciferase/k1_prime /kinetics/luciferase/E.S1 REAC A B addmsg /kinetics/luciferase/k1 /kinetics/luciferase/S1 REAC A B addmsg /kinetics/luciferase/k1_2 /kinetics/luciferase/S1 REAC A B addmsg /kinetics/luciferase/E /kinetics/luciferase/k1 SUBSTRATE n addmsg /kinetics/luciferase/E.S1 /kinetics/luciferase/k1 PRODUCT n addmsg /kinetics/luciferase/S1 /kinetics/luciferase/k1 SUBSTRATE n addmsg /kinetics/luciferase/k1 /kinetics/luciferase/E REAC A B addmsg /kinetics/luciferase/k1_prime_2 /kinetics/luciferase/E REAC A B addmsg /kinetics/luciferase/k5_2 /kinetics/luciferase/E REAC A B addmsg /kinetics/luciferase/k4 /kinetics/luciferase/E REAC B A addmsg /kinetics/luciferase/E.S1 /kinetics/luciferase/k1_prime SUBSTRATE n addmsg /kinetics/luciferase/E.S1.S2 /kinetics/luciferase/k1_prime PRODUCT n addmsg /kinetics/luciferase/S2 /kinetics/luciferase/k1_prime SUBSTRATE n addmsg /kinetics/luciferase/k1_prime /kinetics/luciferase/S2 REAC A B addmsg /kinetics/luciferase/k1_prime_2 /kinetics/luciferase/S2 REAC A B addmsg /kinetics/luciferase/E.P /kinetics/luciferase/k4 SUBSTRATE n addmsg /kinetics/luciferase/P /kinetics/luciferase/k4 PRODUCT n addmsg /kinetics/luciferase/E /kinetics/luciferase/k4 PRODUCT n addmsg /kinetics/luciferase/k1_prime /kinetics/luciferase/E.S1.S2 REAC B A addmsg /kinetics/luciferase/k5_4 /kinetics/luciferase/E.S1.S2 REAC A B addmsg /kinetics/luciferase/k2 /kinetics/luciferase/E.S1.S2 REAC A B addmsg /kinetics/luciferase/k1_2 /kinetics/luciferase/E.S1.S2 REAC B A addmsg /kinetics/luciferase/E.S1.S2 /kinetics/luciferase/k2 SUBSTRATE n addmsg /kinetics/luciferase/E.P1 /kinetics/luciferase/k2 PRODUCT n addmsg /kinetics/luciferase/AMP /kinetics/luciferase/k2 PRODUCT n addmsg /kinetics/luciferase/k2 /kinetics/luciferase/E.P1 REAC B A addmsg /kinetics/luciferase/k3 /kinetics/luciferase/E.P1 REAC A B addmsg /kinetics/luciferase/E.P1 /kinetics/luciferase/k3 SUBSTRATE n addmsg /kinetics/luciferase/E.P /kinetics/luciferase/k3 PRODUCT n addmsg /kinetics/luciferase/photon /kinetics/luciferase/k3 PRODUCT n addmsg /kinetics/luciferase/k3 /kinetics/luciferase/E.P REAC B A addmsg /kinetics/luciferase/k6 /kinetics/luciferase/E.P REAC A B addmsg /kinetics/luciferase/k4 /kinetics/luciferase/E.P REAC A B addmsg /kinetics/luciferase/k4 /kinetics/luciferase/P REAC B A addmsg /kinetics/luciferase/E /kinetics/luciferase/k1_prime_2 SUBSTRATE n addmsg /kinetics/luciferase/E.S2 /kinetics/luciferase/k1_prime_2 PRODUCT n addmsg /kinetics/luciferase/S2 /kinetics/luciferase/k1_prime_2 SUBSTRATE n addmsg /kinetics/luciferase/E.S2 /kinetics/luciferase/k1_2 SUBSTRATE n addmsg /kinetics/luciferase/E.S1.S2 /kinetics/luciferase/k1_2 PRODUCT n addmsg /kinetics/luciferase/S1 /kinetics/luciferase/k1_2 SUBSTRATE n addmsg /kinetics/luciferase/k1_prime_2 /kinetics/luciferase/E.S2 REAC B A addmsg /kinetics/luciferase/k5_3 /kinetics/luciferase/E.S2 REAC A B addmsg /kinetics/luciferase/k1_2 /kinetics/luciferase/E.S2 REAC A B addmsg /kinetics/luciferase/k2 /kinetics/luciferase/AMP REAC B A addmsg /kinetics/luciferase/k3 /kinetics/luciferase/photon REAC B A addmsg /kinetics/luciferase/E /kinetics/luciferase/k5_2 SUBSTRATE n addmsg /kinetics/luciferase/E_in /kinetics/luciferase/k5_2 PRODUCT n addmsg /kinetics/luciferase/E.S2 /kinetics/luciferase/k5_3 SUBSTRATE n addmsg /kinetics/luciferase/E.S2_in /kinetics/luciferase/k5_3 PRODUCT n addmsg /kinetics/luciferase/E.S1.S2 /kinetics/luciferase/k5_4 SUBSTRATE n addmsg /kinetics/luciferase/E.S1.S2_in /kinetics/luciferase/k5_4 PRODUCT n addmsg /kinetics/luciferase/photon /kinetics/luciferase/num_photons SUMTOTAL n nInit addmsg /kinetics/luciferase/photon /kinetics/luciferase/PMT_count SUMTOTAL n nInit addmsg /kinetics/luciferase/E.P /kinetics/luciferase/k6 SUBSTRATE n addmsg /kinetics/luciferase/E.P_in /kinetics/luciferase/k6 PRODUCT n addmsg /kinetics/luciferase/k6 /kinetics/luciferase/E.P_in REAC B A addmsg /kinetics/luciferase/k5_4 /kinetics/luciferase/E.S1.S2_in REAC B A addmsg /kinetics/luciferase/k5_3 /kinetics/luciferase/E.S2_in REAC B A addmsg /kinetics/luciferase/k5_2 /kinetics/luciferase/E_in REAC B A addmsg /kinetics/luciferase/PMT_count /graphs/conc1/PMT_count.Co PLOT Co *PMT_count.Co *51 addmsg /kinetics/xtab /graphs/conc1/xtab.output PLOT output *xtab.output *white addmsg /kinetics/luciferase/E /graphs/conc2/E.Co PLOT Co *E.Co *54 enddump // End of dump call /kinetics/luciferase/E.S1/notes LOAD \ "S1 is ATP. E.S1 is luciferase.ATP" call /kinetics/luciferase/S1/notes LOAD \ "S1 is ATP" \ "Conc as specified by Promega." call /kinetics/luciferase/S2/notes LOAD \ "S2 = LH2 = luciferin." \ "" call /kinetics/luciferase/E.S2/notes LOAD \ "S2 is Luciferin." call /kinetics/luciferase/PMT_count/notes LOAD \ "Volume is scaled so that 1 photon gives a Co equivalent of 0.0031," \ "which is the collection efficiency." \ "" \ "vol = 1.6667e-21 / 0.0031 = 5.37e-19" \ "" complete_loading