Sample T3D pGenesis job

Here is a sample job file for running the parameter searching example:


#QSUB -q mpp                 # Mandatory qsub options specifying 
#QSUB -l mpp_p=16            # mpp queue, #PEs, T3D residency
#QSUB -l mpp_t=180           # time in seconds, memory limit, 
#QSUB -lM 4Mw                # and time limit in seconds.
#QSUB -lT 150

set echo                     # Turn on echo.

setenv MPP_NPES 16           # Set environment variable
                             # MPP_NPES to be the number
                             # of T3D processors you wish
                             # to use.  Specify a power
                             # of two.

setenv PVM_RETRY_COUNT 5000000   # Make PVM keep retrying if recipient's
                                 # message buffers are full

cd $TMP                      # Move to the protected 
                             # temporary directory
                             # associated with this job.

cp /afs/psc/biomed/prod/genesis/parallel/Scripts/param/*.g $TMP
cp /afs/psc/biomed/prod/genesis/parallel/Scripts/param/.simrc $TMP/.simrc
cp /afs/psc/biomed/prod/genesis/parallel/Scripts/param/.psimrc $TMP/.psimrc

/afs/psc/biomed/prod/genesis/parallel/bin/nxpgenesis -batch -notty demo.g

This job would be submitted on the C90 by typing "qsub sample.job" and from the Ultrix front ends by typing "pscsub sample.job". The output from the job will appear in your home directory.