Early fate of exogenous promoters in E. coli.
Title | Early fate of exogenous promoters in E. coli. |
Publication Type | Journal Article |
Year of Publication | 2020 |
Authors | Yousuf M, Iuliani I, Veetil RT, Seshasayee ASai Narain, Sclavi B, Lagomarsino MCosentino |
Journal | Nucleic Acids Res |
Date Published | 2020 Jan 21 |
ISSN | 1362-4962 |
Abstract | Gene gain by horizontal gene transfer is a major pathway of genome innovation in bacteria. The current view posits that acquired genes initially need to be silenced and that a bacterial chromatin protein, H-NS, plays a role in this silencing. However, we lack direct observation of the early fate of a horizontally transferred gene to prove this theory. We combine sequencing, flow cytometry and sorting, followed by microscopy to monitor gene expression and its variability after large-scale random insertions of a reporter gene in a population of Escherichia coli bacteria. We find that inserted promoters have a wide range of gene-expression variability related to their location. We find that high-expression clones carry insertions that are not correlated with H-NS binding. Conversely, binding of H-NS correlates with silencing. Finally, while most promoters show a common level of extrinsic noise, some insertions show higher noise levels. Analysis of these high-noise clones supports a scenario of switching due to transcriptional interference from divergent ribosomal promoters. Altogether, our findings point to evolutionary pathways where newly-acquired genes are not necessarily silenced, but may immediately explore a wide range of expression levels to probe the optimal ones. |
DOI | 10.1093/nar/gkz1196 |
Alternate Journal | Nucleic Acids Res. |
PubMed ID | 31960057 |