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2025
MacDonald E, Forrester A, Valades-Cruz CA, Madsen TD, Hetmanski JHR, Dransart E, Ng Y, Godbole R, Shp AAkhil, Leconte L et al..  2025.  Growth factor-triggered de-sialylation controls glycolipid-lectin-driven endocytosis.. Nat Cell Biol.
2024
Gupta D, Sane SP, Arakeri JH.  2024.  Generating controlled gust perturbations using vortex rings.. PLoS One. 19(7):e0305084.
Grossen C, Ramakrishnan U.  2024.  Genetic load.. Curr Biol. 34(24):R1216-R1220.
Mishra S., Manohar V., Chandel S., Manoj T., Bhattacharya S., Hegde N., Nath V.R., Krishnan H., Wendling C., Mattia T.D. et al..  2024.  A genetic screen to uncover mechanisms underlying lipid transfer protein function at membrane contact sites . Life Sci Alliance. 7(6):e202302525.
Panda S, Anandan A, K Shafi M, Naika MBN, Sowdhamini R, Vanishree G, Sarkar S, Travis AJ, Norton GJ, Price AH.  2024.  Genome-wide association study reveals effect of nsSNPs on candidate genes in rice during iron deficiency.. Funct Integr Genomics. 24(6):198.
Raju A, Siggia ED.  2024.  A geometrical model of cell fate specification in the mouse blastocyst.. Development. 151(8)
Marathe K, Maddison WP, Kunte K.  2024.  Ghatippuspaschima, a new species and genus of plexippine jumping spider from the Western Ghats of India (Salticidae, Plexippini, Plexippina).. Zookeys. 1191:89-103.
2023
Dahal N, Romine MG, Khatiwara S, Ramakrishnan U, Lamichhaney S.  2023.  Gene flow drives genomic diversity in Asian Pikas distributed along the core and range-edge habitats in the Himalayas.. Ecol Evol. 13(5):e10129.
Gopurappilly R, Musthafa T, Sukumaran S, Viswanath B, Hasan G.  2023.  Generation of feeder-independent transgene-free iPSC lines from a young-onset Parkinson's disease (YOPD) patient with a homozygous PLA2G6: c.2222G>A (p. Arg741Gln) mutation (NCBSi003-A) and unaffected heterozygous parent (NCBSi004-A).. Stem Cell Res. 67:103033.
Raju A, Siggia ED.  2023.  A geometrical perspective on development.. Dev Growth Differ.
Kawahara AY, Storer C, Carvalho APaula S, Plotkin DM, Condamine FL, Braga MP, Ellis EA, St Laurent RA, Li X, Barve V et al..  2023.  A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins.. Nat Ecol Evol.
2022
Purkanti R, Thattai M.  2022.  Genome doubling enabled the expansion of yeast vesicle traffic pathways.. Sci Rep. 12(1):11213.
Verma S, Sowdhamini R.  2022.  A genome-wide search of Toll/Interleukin-1 receptor (TIR) domain-containing adapter molecule (TICAM) and their evolutionary divergence from other TIR domain containing proteins.. Biol Direct. 17(1):24.
Tyagi A., Khan A., Thatte P., Ramakrishnan U..  2022.  Genome-wide SNP markers from fecal samples reveal anthropogenic impacts on connectivity: case of a small carnivore in the central Indian landscape. ANIMAL CONSERVATION .
Zaarour RFaouzi, Sharda M, Azakir B, Venkatesh GHassan, Khouzam RAbou, Rifath A, Nizami ZNausheen, Abdullah F, Mohammad F, Karaali H et al..  2022.  Genomic Analysis of Waterpipe Smoke-Induced Lung Tumor Autophagy and Plasticity.. Int J Mol Sci. 23(12)
Pal A, Iyer MS, Srinivasan S, Seshasayee ASai Narain, Venkatesh KV.  2022.  Global pleiotropic effects in adaptively evolved lacking CRP reveal molecular mechanisms that define the growth physiology.. Open Biol. 12(2):210206.
Yadav A, Vagne Q, Sens P, Iyengar G, Rao M.  2022.  Glycan processing in the Golgi: optimal information coding and constraints on cisternal number and enzyme specificity.. Elife. 11
2021
Bhattacharyya T, Sowdhamini R.  2021.  Genome-wide survey of tyrosine phosphatases in thirty mammalian genomes. Cell Signal. (110009)
Khan A, Patel K, Shukla H, Viswanathan A, van der Valk T, Borthakur U, Nigam P, Zachariah A, Jhala YV, Kardos M et al..  2021.  Genomic evidence for inbreeding depression and purging of deleterious genetic variation in Indian tigers.. Proc Natl Acad Sci U S A. 118(49)
Kurzthaler C, Mandal S, Bhattacharjee T, Löwen H, Datta SS, Stone HA.  2021.  A geometric criterion for the optimal spreading of active polymers in porous media.. Nat Commun. 12(1):7088.
Rand DA, Raju A, Sáez M, Corson F, Siggia ED.  2021.  Geometry of gene regulatory dynamics.. Proc Natl Acad Sci U S A. 118(38)
Sitaraman S, Yadav G, Agarwal V, Jabeen S, Verma S, Jadhav M, Thirumalai V.  2021.  Gjd2b-mediated gap junctions promote glutamatergic synapse formation and dendritic elaboration in Purkinje neurons.. Elife. 10
Hoban S, Bruford MW, W Funk C, Galbusera P, M Griffith P, Grueber CE, Heuertz M, Hunter ME, Hvilsom C, Stroil BKalamujic et al..  2021.  Global Commitments to Conserving and Monitoring Genetic Diversity Are Now Necessary and Feasible.. Bioscience. 71(9):964-976.
Vilizzi L, Copp GH, Hill JE, Adamovich B, Aislabie L, Akin D, Al-Faisal AJ, Almeida D, Azmai MNAmal, Bakiu R et al..  2021.  A global-scale screening of non-native aquatic organisms to identify potentially invasive species under current and future climate conditions.. Sci Total Environ. 788:147868.
Kumari N, Bandyopadhyay D, Kumar V, Venkatesh DB, Prasad S, Prakash S, Krishnaswamy PR, Balaram P, Bhat N.  2021.  Glycation of Albumin and its Implication in Diabetes: A Comprehensive Analysis using Mass Spectrometry.. Clin Chim Acta.
Pothukuchi P, Agliarulo I, Pirozzi M, Rizzo R, Russo D, Turacchio G, Nuechel J, Yang J-S, Gehin C, Capolupo L et al..  2021.  GRASP55 regulates intra-Golgi localization of glycosylation enzymes to control glycosphingolipid biosynthesis. EMBO JOURNAL. :e107766.
Rastogi S., Chanchani P., Sankaran M., Warrier R..  2021.  Grasslands half-full: investigating drivers of spatial heterogeneity in ungulate occurrence in Indian Terai. JOURNAL OF ZOOLOGY .
2020
Agarwal I, Thackeray T, Khandekar A.  2020.  Geckos in the granite: two new geckos (Squamata: Gekkonidae) from rocky, scrub habitats in Rishi Valley, Andhra Pradesh, India. ZOOTAXA. 4838(4):451-474.
Hautier Y, Zhang P, Loreau M, Wilcox KR, Seabloom EW, Borer ET, Byrnes JEK, Koerner SE, Komatsu KJ, Lefcheck JS et al..  2020.  General destabilizing effects of eutrophication on grassland productivity at multiple spatial scales.. Nat Commun. 11(1):5375.
Hoban S, Bruford M, Jackson JD, Lopes-Fernandes M, , Ramakrishnan U, al et.  2020.  Genetic diversity targets and indicators in the CBD post-2020 Global Biodiversity Framework must be improved. BIOLOGICAL CONSERVATION. 248
Janardan V, Sharma S, Basu U, Raghu P.  2020.  A Genetic Screen in Drosophila To Identify Novel Regulation of Cell Growth by Phosphoinositide Signaling.. G3 (Bethesda). 10(1):57-67.
Kesarwani S, Lama P, Chandra A, P Reddy P, Jijumon AS, Bodakuntla S, Rao BM, Janke C, Das R, Sirajuddin M.  2020.  Genetically encoded live-cell sensor for tyrosinated microtubules.. J Cell Biol. 219(10)
Trivedi D, Cm V, Bisht K, Janardan V, Pandit A, Basak B, H S, Ramesh N, Raghu P.  2020.  A genome engineering resource to uncover principles of cellular organization and tissue architecture by lipid signalling.. Elife. 9
Srinivasan R, Walvekar AS, Rashida Z, Seshasayee A, Laxman S.  2020.  Genome-scale reconstruction of Gcn4/ATF4 networks driving a growth program. PLoS Genet. 16(12):e1009252.
Kitnya N, Prabhudev MV, Bhatta CPrasad, Pham THong, Nidup T, Megu K, Chakravorty J, Brockmann A, Otis GW.  2020.  Geographical distribution of the giant honey bee Smith, 1871 (Hymenoptera, Apidae).. Zookeys. 951:67-81.
Dhingra S, Sowdhamini R, Cadet F, Offmann B.  2020.  A glance into the evolution of template-free protein structure prediction methodologies.. Biochimie. 175:85-92.
Samhita L, Raval PK, Agashe D.  2020.  Global mistranslation increases cell survival under stress in Escherichia coli.. PLoS Genet. 16(3):e1008654.
Chodankar A, Sadanandappa MK, VijayRaghavan K, Ramaswami M.  2020.  GLOMERULUS-SELECTIVE REGULATION OF A CRITICAL PERIOD FOR INTERNEURON PLASTICITY IN THE ANTENNAL LOBE.. J Neurosci.
Jaiman A, Thattai M.  2020.  Golgi compartments enable controlled biomolecular assembly using promiscuous enzymes.. Elife. 9
Agarwal I, Thackeray T, Pal S, Khandekar A.  2020.  Granite boulders act as deep-time climate refugia: A Miocene divergent clade of rupicolous Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) from the Mysore Plateau, India, with descriptions of three new species. JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH.
Wigley BJ, Augustine DJ, Coetsee C, Ratnam J, Sankaran M.  2020.  Grasses continue to trump trees at soil carbon sequestration following herbivore exclusion in a semi-arid African savanna.. Ecology. :e03008.
Kohli M, Mijiddorj TNadia, Suryawanshi KRamesh, Mishra C, Boldgiv B, Sankaran M.  2020.  Grazing and climate change have site-dependent interactive effects on vegetation in Asian montane rangelands. JOURNAL OF APPLIED ECOLOGY.
2019
Iyer MS, Bhargava K, Pavalam M, Sowdhamini R.  2019.  GenDiS database update with improved approach and features to recognize homologous sequences of protein domain superfamilies.. Database (Oxford). 2019
Baral S, Arumugam G, Deshmukh R, Kunte K.  2019.  Genetic architecture and sex-specific selection govern modular, male-biased evolution of .. Sci Adv. 5(5):eaau3753.
Upadhyay AKumar, Sowdhamini R.  2019.  Genome-Wide Analysis of Domain-Swap Predicted Products in the Genome of Anti-Stress Medicinal Plant: .. Bioinform Biol Insights. 13:1177932218821362.
Bhattacharyya T, Sowdhamini R.  2019.  Genome-Wide Search for Tyrosine Phosphatases in the Human Genome Through Computational Approaches Leads to the Discovery of Few New Domain Architectures.. Evol Bioinform Online. 15:1176934319840289.
Gupta P, Vishnudas CK, Ramakrishnan U, Robin VV, Dharmarajan G.  2019.  Geographical and host species barriers differentially affect generalist and specialist parasite community structure in a tropical sky-island archipelago.. Proc Biol Sci. 286(1904):20190439.
Neelamraju S, Wales DJ, Gosavi S.  2019.  Go-Kit: A Tool To Enable Energy Landscape Exploration of Proteins.. J Chem Inf Model.
2018
Gowda SBM, Paranjpe PD, O Reddy V, Thiagarajan D, Palliyil S, Reichert H, VijayRaghavan K.  2018.  GABAergic inhibition of leg motoneurons is required for normal walking behavior in freely moving.. Proc Natl Acad Sci U S A.
Solari KA, Ramakrishnan U, Hadly EA.  2018.  Gene expression is implicated in the ability of pikas to occupy Himalayan elevational gradient.. PLoS One. 13(12):e0207936.
Houot B, Cazalé-Debat L, Fraichard S, Everaerts C, Saxena N, Sane SP, Ferveur J-F.  2018.  Gene regulation and species-specific evolution of free-flight odor-tracking in Drosophila.. Mol Biol Evol. 35(1):3-15.
Iyer MS, Joshi AG, Sowdhamini R.  2018.  Genome-wide survey of remote homologues for protein domain superfamilies of known structure reveals unequal distribution across structural classes.. Mol Omics.
Varudkar A, Ramakrishnan U.  2018.  Gut microflora may facilitate adaptation to anthropic habitat: A comparative study in .. Ecol Evol. 8(13):6463-6472.
2017
Sabareesan AThody, Udgaonkar JB.  2017.  The G126V Mutation in the Mouse Prion Protein Hinders Nucleation-Dependent Fibril Formation by Slowing Initial Fibril Growth and by Increasing the Critical Concentration.. Biochemistry. 56(44):5931-5942.
Parveen S, Panicker MM, Gupta PKumar.  2017.  Generation of an induced pluripotent stem cell line from chorionic villi of a Turner syndrome spontaneous abortion.. Stem Cell Res. 19:12-16.
Patel RP, Wutke S, Lenz D, Mukherjee S, Ramakrishnan U, Veron G, Fickel J, Wilting A, Förster DW.  2017.  Genetic Structure and Phylogeography of the Leopard Cat (Prionailurus bengalensis) Inferred from Mitochondrial Genomes.. J Hered. 108(4):349-360.
Dahal N, Lissovsky AA, Lin Z, Solari K, Hadly EA, Zhan X, Ramakrishnan U.  2017.  Genetics, morphology and ecology reveal a cryptic pika lineage in the Sikkim Himalaya.. Mol Phylogenet Evol. 106:55-60.
Chib S, Ali F, Seshasayee ASai Narain.  2017.  Genomewide Mutational Diversity in Escherichia coli Population Evolving in Prolonged Stationary Phase.. mSphere. 2(3)
Hsu JL, Crawford JChase, Tammone MN, Ramakrishnan U, Lacey EA, Hadly EA.  2017.  Genomic data reveal a loss of diversity in two species of tuco-tucos (genus Ctenomys) following a volcanic eruption.. Sci Rep. 7(1):16227.
Bangalore MPrakash, Adhikarla S, Mukherjee O, Panicker MM.  2017.  Genotoxic Effects of Culture Media on Human Pluripotent Stem Cells.. Sci Rep. 7:42222.
Mandal R, Bhuyan PJyoti, Chaudhuri P, Rao M, Dasgupta C.  2017.  Glassy swirls of active dumbbells.. Phys Rev E. 96(4-1):042605.
Badrinarayanan A, Le TBK, Spille J-H, Cisse II, Laub MT.  2017.  Global analysis of double-strand break processing reveals in vivo properties of the helicase-nuclease complex AddAB.. PLoS Genet. 13(5):e1006783.
Narayan A, Campos LA, Bhatia S, Fushman D, Naganathan AN.  2017.  Graded Structural Polymorphism in a Bacterial Thermosensor Protein.. J Am Chem Soc. 139(2):792-802.
2016
Lal A, Dhar A, Trostel A, Kouzine F, Seshasayee ASN, Adhya S.  2016.  Genome scale patterns of supercoiling in a bacterial chromosome.. Nat Commun. 7:11055.
Lakshmanan V, Bansal D, Kulkarni J, Poduval D, Krishna S, Sasidharan V, Anand P, Seshasayee A, Palakodeti D.  2016.  Genome-Wide Analysis of Polyadenylation Events in Schmidtea mediterranea.. G3 (Bethesda). 6(10):3035-3048.
Chattopadhyay B, Garg KM, Kumar AKVinoth, D Doss PSwami, Rheindt FE, Kandula S, Ramakrishnan U.  2016.  Genome-wide data reveal cryptic diversity and genetic introgression in an Oriental cynopterine fruit bat radiation.. BMC Evol Biol. 16:41.
Upadhyay AKumar, Sowdhamini R.  2016.  Genome-Wide Prediction and Analysis of 3D-Domain Swapped Proteins in the Human Genome from Sequence Information.. PLoS One. 11(7):e0159627.
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..  2016.  A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Rao RM, Pasha SNaseer, Sowdhamini R.  2016.  Genome-wide survey and phylogeny of S-Ribosylhomocysteinase (LuxS) enzyme in bacterial genomes.. BMC Genomics. 17(1):742.
Ghosh P, Sowdhamini R.  2016.  Genome-wide survey of putative RNA-binding proteins encoded in the human proteome.. Mol Biosyst. 12(2):532-40.
Syed DSakeena, Gowda SBM, O Reddy V, Reichert H, VijayRaghavan K.  2016.  Glial and neuronal Semaphorin signaling instruct the development of a functional myotopic map for Drosophila walking.. Elife. 5
Gupta T, Kumar A, Cattenoz PB, VijayRaghavan K, Giangrande A.  2016.  The Glide/Gcm fate determinant controls initiation of collective cell migration by regulating Frazzled.. Elife. 5
Saha S, Anilkumar AAmbika, Mayor S.  2016.  GPI-anchored protein organization and dynamics at the cell surface.. J Lipid Res. 57(2):159-75.
2015
Mullin AP, Sadanandappa MK, Ma W, Dickman DK, VijayRaghavan K, Ramaswami M, Sanyal S, Faundez V.  2015.  Gene dosage in the dysbindin schizophrenia susceptibility network differentially affect synaptic function and plasticity.. J Neurosci. 35(1):325-38.
Upadhyay AK, Chacko AR, Gandhimathi A, Ghosh P, Harini K, Joseph AP, Joshi AG, Karpe SD, Kaushik S, Kuravadi N et al..  2015.  Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties.. BMC Plant Biol. 15:212.
Srinivasan R, Scolari VFerdinando, Lagomarsino MCosentino, Seshasayee ASai Narain.  2015.  The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli.. Nucleic Acids Res. 43(1):295-308.