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Singh A, Chakrabarti S.  2023.  Diffusion controls local versus dispersed inheritance of histones during replication and shapes epigenomic architecture.. PLoS Comput Biol. 19(12):e1011725.
Silva AP, Mukherjee S, Ramakrishnan U, Fernandes C, Björklund M.  2020.  Closely related species show species-specific environmental responses and different spatial conservation needs: Prionailurus cats in the Indian subcontinent.. Sci Rep. 10(1):18705.
Sil P, Mateos N, Nath S, Buschow S, Manzo C, Suzuki KGN, Fujiwara T, Kusumi A, Garcia-Parajo MF, Mayor S.  2020.  Dynamic actin-mediated nano-scale clustering of CD44 regulates its meso-scale organization at the plasma membrane.. Mol Biol Cell. 31(7):561-579.
Sidhanth C, Bindhya S, Krishnapriya S, Manasa P, Shabna A, Alifia J, Patole C, Kumar V, Garg M, Ganesan TS.  2022.  Phosphoproteome of signaling by ErbB2 in ovarian cancer cells.. Biochim Biophys Acta Proteins Proteom. :140768.
Shukla A, Chattarji S.  2021.  Stressed rats fail to exhibit avoidance reactions to innately aversive social calls.. Neuropsychopharmacology.
Shukla A, Bhattacharyya A, Kuppusamy L, Srivas M, Thattai M.  2017.  Discovering vesicle traffic network constraints by model checking.. PLoS One. 12(7):e0180692.
Shukla H, Suryamohan K, Khan A, Mohan K, Perumal RC, Mathew OK, Menon R, Dixon MD, Muraleedharan M, Kuriakose B et al..  2022.  Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation. . Gigascience. 12:giac112
Shrivastava R, Köster D, Kalme S, Mayor S, Neerathilingam M.  2015.  Tailor-made ezrin actin binding domain to probe its interaction with actin in-vitro.. PLoS One. 10(4):e0123428.
Shivaprasad PV.  2019.  New clues into the mechanisms of rice domestication.. J Biosci. 44(2)
Shivaprasad PV, Hohn T, Akbergenov R.  2015.  Biochemical requirements for two Dicer-like activities from wheat germ.. PLoS One. 10(1):e0116736.
Shivakumaraswamy S, Kumar S, Bellur A, Polisetty SDev, Balaram H.  2022.  Mechanistic Insights into the Functioning of a Two-Subunit GMP Synthetase, an Allosterically Regulated, Ammonia Channeling Enzyme. BIOCHEMISTRY. 61(18):1988-2006.
Shirke PUday, Goswami H, Kumar V, Shah D, Beri S, Das S, Bellare J, Mayor S, Venkatesh KV, Seth JR et al..  2021.  "Viscotaxis"- Directed Migration of Mesenchymal Stem Cells in Response to Loss Modulus Gradient.. Acta Biomater.
Shingate P, Upadhyay A, Khader S, Sowdhamini R.  2015.  172 Computational analysis and prediction of proteins that undergo domain swapping.. J Biomol Struct Dyn. 33 Suppl 1:112-3.
Shingate P, Warwicker J, Sowdhamini R.  2015.  Energetic Calculations to Decipher pH-Dependent Oligomerization and Domain Swapping of Proteins.. PLoS One. 10(6):e0127716.
Shetty R, Joshi D, Jain M, Vasudevan M, Paul JChrysolite, Bhat G, Banerjee P, Abe T, Kiyonari H, VijayRaghavan K et al..  2018.  Rudhira/BCAS3 is essential for mouse development and cardiovascular patterning.. Sci Rep. 8(1):5632.
Shettigar N, Joshi A, Dalmeida R, Gopalkrishna R, Chakravarthy A, Patnaik S, Mathew M, Palakodeti D, Gulyani A.  2017.  Hierarchies in light sensing and dynamic interactions between ocular and extraocular sensory networks in a flatworm.. Sci Adv. 3(7):e1603025.
Shee S, Veetil RT, Mohanraj K, Das M, Malhotra N, Bandopadhyay D, Beig H, Birua S, Niphadkar S, Nagarajan SNarayanan et al..  2023.  Biosensor-integrated transposon mutagenesis reveals as a coordinator of redox homeostasis in .. Elife. 12
Shashidhara LS, Joshi A.  2023.  Not teaching evolution is an injustice.. Science. 380(6652):1303.
Sharma Y, Saha S, Joseph A, Krishnan H, Raghu P.  2020.  In vitro human stem cell derived cultures to monitor calcium signaling in neuronal development and function. Wellcome Open Res. 5:16.
Sharma A, Tiwari V, Sowdhamini R.  2020.  Computational search for potential COVID-19 drugs from FDAapproved drugs and small molecules of natural origin identifies several anti-virals and plant products.. J Biosci. 45
Sharma SDas, Reddy BKumar, Pal R, Ritakari TE, Cooper JD, Selvaraj BT, Kind PC, Chandran S, Wyllie DJA, Chattarji S.  2023.  Astrocytes mediate cell non-autonomous correction of aberrant firing in human FXS neurons.. Cell Rep. 42(4):112344.
Sharma SDas, Pal R, Reddy BKumar, Selvaraj BT, Raj N, Samaga KKumar, Srinivasan DJ, Ornelas L, Sareen D, Livesey MR et al..  2020.  Cortical neurons derived from human pluripotent stem cells lacking FMRP display altered spontaneous firing patterns.. Mol Autism. 11(1):52.
Sharma A, Krishna S, Sowdhamini R.  2023.  Bioinformatics analysis of mutations sheds light on the evolution of Dengue NS1 protein with implications in the identification of potential functional and druggable sites.. Mol Biol Evol.
Sharma S, Zajac M, Krishnan Y.  2020.  A DNA Aptamer for Cyclic Adenosine Monophosphate that Shows Adaptive Recognition.. Chembiochem. 21(1-2):157-162.
Sharma A, Hasan G.  2020.  Modulation of flight and feeding behaviours requires presynaptic IPRs in dopaminergic neurons.. Elife. 9
Sharma A, Talimarada D, Yadav UPrasad, Singh N, A. Reddy S, Bag D, Biswas K, Baidya A, Borale AN, Shinde D et al..  2020.  Design and Synthesis of New Tubulin Polymerization Inhibitors Inspired from Combretastatin A-4: An Anticancer Agent. ChemistrySelect. 5(37):11560-11572.
Sharma S, Mathre S, Ramya V, Shinde D, Raghu P.  2019.  Phosphatidylinositol 5 Phosphate 4-Kinase Regulates Plasma-Membrane PIP Turnover and Insulin Signaling.. Cell Rep. 27(7):1979-1990.e7.
Shariq M, Sahasrabuddhe V, Krishna S, Radha S, Bellampalli R, Dwivedi A, Cheramangalam R, Reizis B, Hébert J, Ghosh HS.  2021.  Adult neural stem cells have latent inflammatory potential that is kept suppressed by to facilitate adult neurogenesis.. Sci Adv. 7(21)
Sharda M, Badrinarayanan A, Seshasayee ASai Narain.  2020.  Evolutionary and Comparative analysis of bacterial Non-Homologous End Joining Repair.. Genome Biol Evol.
Shameer K, Naika MBN, K Shafi M, Sowdhamini R.  2019.  Decoding systems biology of plant stress for sustainable agriculture development and optimized food production.. Prog Biophys Mol Biol. 145:19-39.
Shameer K, Tripathi LP, Kalari KR, Dudley JT, Sowdhamini R.  2016.  Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.. Brief Bioinform. 17(5):841-62.
Shakeel M, Kaushik S, Tanimura T, Brockmann A, Kain P.  2023.  Tracking Sugar-Elicited Local Searching Behavior in Drosophila.. J Vis Exp. (201)
Shakeel M, Brockmann A.  2023.  Temporal effects of sugar intake on fly local search and honey bee dance behaviour.. J Comp Physiol A Neuroethol Sens Neural Behav Physiol.
Shah A, Jain R, Brockmann A.  2018.  : A Candidate Transcription Factor Involved in Molecular Processes Underlying Time-Memory.. Front Psychol. 9:865.
K Shafi M, Joshi AG, Meenakshi I, Pasha SNaseer, Harini K, Mahita J, Sajeevan RSivarajan, Karpe SD, Ghosh P, Nitish S et al..  2020.  Dataset for the combined transcriptome assembly of and functional annotation.. Data Brief. 30:105416.
K Shafi M, Sajeevan RSivarajan, Kouser S, Vishnuprasad CN, Sowdhamini R.  2022.  Transcriptome profiling of two Moringa species and insights into their antihyperglycemic activity.. BMC Plant Biol. 22(1):561.
K Shafi M, Sowdhamini R.  2022.  Computational analysis of potential candidate genes involved in the cold stress response of ten Rosaceae members.. BMC Genomics. 23(1):516.
Sezgin E, Levental I, Mayor S, Eggeling C.  2017.  The mystery of membrane organization: composition, regulation and roles of lipid rafts.. Nat Rev Mol Cell Biol.
Setua S, Enguita FJ, Chora ÂFerreira, Ranga-Prasad H, Lahree A, Marques S, Sundaramurthy V, Mota MM.  2020.  Disrupting Plasmodium UIS3-host LC3 interaction with a small molecule causes parasite elimination from host cells.. Commun Biol. 3(1):688.
Setty TGangi, Sarkar A, Coombes D, Dobson RCJ, Subramanian R.  2020.  Structure and Function of -Acetylmannosamine Kinases from Pathogenic Bacteria.. ACS Omega. 5(48):30923-30936.
Seshasayee ASai Narain.  2018.  Reply to Jobling, "Ectopic Expression of the and Genes of the Cryptic Prophage Rac of K-12 May Be Toxic but Do They Really Encode Toxins?: a Case for Using Genetic Context To Understand Function". mSphere. 3(2)
Ser-Giacomi E, Zinger L, Malviya S, de Vargas C, Karsenti E, Bowler C, De Monte S.  2018.  Ubiquitous abundance distribution of non-dominant plankton across the global ocean.. Nat Ecol Evol.
Senthoorraja R, Subaharan K, Manjunath S, Pragadheesh VShanmugam, Bakthavatsalam N, Mohan MGounder, Senthil-Nathan S, Basavarajappa S.  2021.  Electrophysiological, behavioural and biochemical effect of Ocimum basilicum oil and its constituents methyl chavicol and linalool on Musca domestica L.. Environ Sci Pollut Res Int.
Sengupta I, Udgaonkar J.  2019.  Monitoring site-specific conformational changes in real-time reveals a misfolding mechanism of the prion protein.. Elife. 8
Sengupta I, Udgaonkar JB.  2018.  Structural mechanisms of oligomer and amyloid fibril formation by the prion protein.. Chem Commun (Camb).
Sengupta I, Udgaonkar JB.  2017.  Expression and purification of single cysteine-containing mutant variants of the mouse prion protein by oxidative refolding.. Protein Expr Purif.
Sengupta T, Das R, Chattarji S.  2016.  Chronic but not acute immobilization stress stably enhances hippocampal CA1 metabotropic glutamate receptor dependent Long-Term Depression.. Neurosci Lett. 633:101-105.
Sengupta I, Bhate SH, Das R, Udgaonkar JB.  2017.  Salt-mediated oligomerization of the mouse prion protein monitored by real time NMR.. J Mol Biol.
Sen S, Kumar H, Udgaonkar JB.  2021.  Microsecond dynamics during the binding-induced folding of an intrinsically disordered protein.. J Mol Biol. :167254.
Sen S, VijayRaghavan K.  2019.  Heinrich Reichert (1949-2019).. Development. 146(16)
Sen S, Udgaonkar JB.  2019.  Binding-induced folding under unfolding conditions: Switching between induced fit and conformational selection mechanisms.. J Biol Chem. 294(45):16942-16952.
Sen S, Goluguri RReddy, Udgaonkar JB.  2017.  A Dry Transition State More Compact Than the Native State Is Stabilized by Non-Native Interactions during the Unfolding of a Small Protein.. Biochemistry.
Sellamuthu G, Jegadeeson V, Sajeevan RSivarajan, Rajakani R, Parthasarathy P, Raju K, Shabala L, Chen Z-H, Zhou M, Sowdhamini R et al..  2020.  Distinct Evolutionary Origins of Intron Retention Splicing Events in Antiporter Transcripts Relate to Sequence Specific Distinctions in Species.. Front Plant Sci. 11:267.
Seabloom EW, Borer ET, Buckley YM, Cleland EE, Davies KF, Firn J, W Harpole S, Hautier Y, Lind EM, MacDougall AS et al..  2015.  Plant species' origin predicts dominance and response to nutrient enrichment and herbivores in global grasslands.. Nat Commun. 6:7710.
Scolari VF, Lagomarsino MCosentino.  2015.  Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid.. Soft Matter. 11(9):1677-87.
Schwarz O, Bohra AAsgar, Liu X, Reichert H, VijayRaghavan K, Pielage J.  2017.  Motor control of Drosophila feeding behavior.. Elife. 6
Schulze A, Gomez-Marin A, Rajendran VG, Lott G, Musy M, Ahammad P, Deogade A, Sharpe J, Riedl J, Jarriault D et al..  2015.  Dynamical feature extraction at the sensory periphery guides chemotaxis.. Elife. 4
Schoen JM, Neelakantan A, Cushman SA, Dutta T, Habib B, Jhala YV, Mondal I, Ramakrishnan U, P Reddy A, Saini S et al..  2022.  Synthesizing habitat connectivity analyses of a globally important human-dominated tiger-conservation landscape.. Conserv Biol.
Saxena K, Webster J, Hallas-Potts A, Mackenzie R, Spooner PA, Thomson D, Kind P, Chatterji S, Morris RGM.  2018.  Experiential contributions to social dominance in a rat model of fragile-X syndrome.. Proc Biol Sci. 285(1880)
Saxena N, Natesan D, Sane SP.  2018.  Odor source localization in complex visual environments by fruit flies.. J Exp Biol. 221(Pt 2)
Saxena K, Chakraborty P, Chattarji S.  2020.  The same stress has divergent effects on social versus asocial manifestations of anxiety-like behavior over time.. Stress. :1-21.
Savory FR, Ramakrishnan U.  2015.  Cryptic diversity and habitat partitioning in an economically important aphid species complex.. Infect Genet Evol. 30:230-7.
Sathyanarayanan N, Cannone G, Gakhar L, Katagihallimath N, Sowdhamini R, Ramaswamy S, Vinothkumar KR.  2019.  Molecular basis for metabolite channeling in a ring opening enzyme of the phenylacetate degradation pathway.. Nat Commun. 10(1):4127.
Sathe M, Muthukrishnan G, Rae J, Disanza A, Thattai M, Scita G, Parton RG, Mayor S.  2018.  Small GTPases and BAR domain proteins regulate branched actin polymerisation for clathrin and dynamin-independent endocytosis.. Nat Commun. 9(1):1835.
Sasidharan R, Venkatesan R.  2019.  Seed Elaiosome Mediates Dispersal by Ants and Impacts Germination in Ricinus communis. FRONTIERS IN ECOLOGY AND EVOLUTION. 7
Sarov M, Barz C, Jambor H, Hein MY, Schmied C, Suchold D, Stender B, Janosch S, Kj VVikas, Krishnan RT et al..  2016.  A genome-wide resource for the analysis of protein localisation in Drosophila.. Elife. 5
Sarkar SR, Dubey VKumar, Jahagirdar A, Lakshmanan V, Haroon MMohamed, Sowndarya S, Sowdhamini R, Palakodeti D.  2022.  DDX24 is required for muscle fiber organization and the suppression of wound-induced Wnt activity necessary for pole re-establishment during planarian regeneration.. Dev Biol.
Sarkar SS, Trivedi DV, Morck MM, Adhikari AS, Pasha SN, Ruppel KM, Spudich JA.  2020.  The hypertrophic cardiomyopathy mutations R403Q and R663H increase the number of myosin heads available to interact with actin.. Sci Adv. 6(14):eaax0069.
Sarkar D, Shariq M, Dwivedi D, Krishnan N, Naumann R, Bhalla USingh, Ghosh HS.  2021.  Adult brain neurons require continual expression of the schizophrenia-risk gene Tcf4 for structural and functional integrity.. Transl Psychiatry. 11(1):494.
Sarkar V, Mahapatra C, Mohapatra PP, Nair MV, Kunte K.  2021.  Description of three new species of the genus Mata Distant, 1906 (Hemiptera: Cicadidae: Cicadinae: Oncotympanini) with notes on their natural history from Indian state of Meghalaya, India.. Zootaxa. 4908(1):zootaxa.4908.1.1.
Sarkar A, Mukundan N, Sowndarya S, Dubey VKumar, Babu R, Lakshmanan V, Rangiah K, Panicker MM, Palakodeti D, Subramanian SPeruvemba et al..  2019.  Serotonin is essential for eye regeneration in planaria Schmidtea mediterranea.. FEBS Lett.
Saravanan B, Soota D, Islam Z, Majumdar S, Mann R, Meel S, Farooq U, Walavalkar K, Gayen S, Singh AKumar et al..  2020.  Ligand dependent gene regulation by transient ERα clustered enhancers.. PLoS Genet. 16(1):e1008516.
Sanz-Paz M, van Zanten TS, Manzo C, Mivelle M, Garcia-Parajo MF.  2023.  Broadband Plasmonic Nanoantennas for Multi-Color Nanoscale Dynamics in Living Cells.. Small. :e2207977.
Sanyal A, Agarwal S, Ramakrishnan U, Garg KM, Chattopadhyay B.  2022.  Using Environmental Sampling to Enable Zoonotic Pandemic Preparedness.. J Indian Inst Sci. :1-20.
Sant HH, Sane SP.  2018.  The Mechanosensory-Motor Apparatus of Antennae in the Oleander hawk moth (Daphnis nerii, Lepidoptera).. J Comp Neurol.
Sankaran M, Staver C.  2019.  Droughts and the ecological future of tropical savanna vegetation. JOURNAL OF ECOLOGY. 107(4):1531-1549.
Sankaradoss A, Jagtap S, Nazir J, Moula S-E, Modak A, Fialho J, Iyer M, Shastri JS, Dias M, Gadepalli R et al..  2022.  Immune profile and responses of a novel Dengue DNA vaccine encoding EDIII-NS1 consensus design based on Indo-African sequences.. Mol Ther.
Sanjenbam P, Buddidathi R, Venkatesan R, Shivaprasad PV, Agashe D.  2020.  Phenotypic diversity of Methylobacterium associated with rice landraces in North-East India.. PLoS One. 15(2):e0228550.
Sanjenbam P, Shivaprasad P.V, Agashe D.  2022.  Impact of Phyllosphere Methylobacterium on Host Rice Landraces. MICROBIOLOGY SPECTRUM.
Sane M, Diwan GD, Bhat BA, Wahl LM, Agashe D.  2023.  Shifts in mutation spectra enhance access to beneficial mutations.. Proc Natl Acad Sci U S A.. 120(22):e2207355120.
Sane SP.  2020.  Editorial overview: Insect-inspired engineering: mechanisms, processes and algorithms.. Curr Opin Insect Sci. 42:vi-viii.
Sane SP, Wehling R, Daniel T.  2024.  Multisensory integration in insect flight control.. Biol Lett. 20(1):20230565.
Sane SP.  2016.  Neurobiology and biomechanics of flight in miniature insects.. Curr Opin Neurobiol. 41:158-166.
Sane SP.  2017.  Eppur si vola (and yet it flies).. J Exp Biol. 220(Pt 4):514-516.
Sane SP, Ramaswamy SSubha, Raja SVarma.  2020.  Insect architecture: structural diversity and behavioral principles.. Curr Opin Insect Sci.
Sane M, Miranda JJohn, Agashe D.  2018.  Antagonistic pleiotropy for carbon use is rare in new mutations.. Evolution.
Sane SP, Manjunath M, Mukunda CL.  2023.  Vestibular feedback for flight control in hawkmoths.. Trends Neurosci.
Sane SP.  2020.  Enhancing insect flight research with a lab-on-cables.. Sci Robot. 5(45)
Sandhya S, Mudgal R, Kumar G, Sowdhamini R, Srinivasan N.  2016.  Protein sequence design and its applications.. Curr Opin Struct Biol. 37:71-80.
Sanap RV, Joglekar A, Prajapati D, Caleb JTD.  2017.  Two new species of Langelurillus Próchniewicz, 1994 from India (Araneae: Salticidae: Aelurillina). Zootaxa. 4318(1):135-146.
Sanap R, Pawar S, Joglekar A, Khandekar A.  2022.  A new species of Conothele Thorell, 1878 (Aranei Halonoproctidae) from the northern Western Ghats, India. ARTHROPODA SELECTA. 31(1):79-89.
Samhita L, Raval PK, Stephenson G, Thutupalli S, Agashe D.  2021.  The Impact of Mistranslation on Phenotypic Variability and Fitness.. Evolution.
Samhita L, Raval PK, Agashe D.  2020.  Global mistranslation increases cell survival under stress in Escherichia coli.. PLoS Genet. 16(3):e1008654.
Samhita L.  2021.  The Boggarts of biology: how non-genetic changes influence the genotype.. Curr Genet. 67(1):65-77.
Samad I, Kelkar N, Krishnaswamy J.  2021.  Life at the borderline: Responses of Ganges river dolphins to dry-season flow regulation of river and canal habitats by the Farakka barrage. AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS .
Saltzberg DJ, Viswanath S, Echeverria I, Chemmama IE, Webb B, Sali A.  2021.  Using Integrative Modeling Platform to Compute, Validate, and Archive a Model of a Protein Complex Structure.. Protein Sci. 30(1):250-261.
Salian SRaj, Pandya RKirit, Laxminarayana SLakshmi Ko, Krishnamurthy H, Cheredath A, Tholeti P, Uppangala S, Kalthur G, Majumdar S, Schlatt S et al..  2020.  Impact of Temperature and Time Interval Prior to Immature Testicular-Tissue Organotypic Culture on Cellular Niche.. Reprod Sci.
Saini N, Lakshminarayanan S, Kundu P, Sarin A.  2022.  Notch1 Modulation of Cellular Calcium Regulates Mitochondrial Metabolism and Anti-Apoptotic Activity in T-Regulatory Cells.. Front Immunol. 13:832159.
Sahay S, Adhikari S, Hormoz S, Chakrabarti S.  2023.  An improved rhythmicity analysis method using Gaussian Processes detects cell-density dependent circadian oscillations in stem cells.. Bioinformatics.
Sahasrabuddhe V, Ghosh HS.  2022.  Cx3Cr1-Cre induction leads to microglial activation and IFN-1 signaling caused by DNA damage in early postnatal brain.. Cell Rep. 38(3):110252.

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