2003

Bhaduri, A., Krishnaswamy, L., Ullal, G.R., Panicker, M. and Sowdhamini, R. (2003)
Fold prediction and comparative modeling of Bdm1: a probable a/b hydrolase 
associated with hot water epilepsy.
J. Mol. Model, 9: 3-8

Bhalerao, S., Sen, A., Stocker, R. and Rodrigues, V. (2003).
Olfactory neurons expressing identified receptor genes project to subsets of 
glomeruli within the antennal lobe of Drosophila melanogaster.
Journal Neurobiology, 54, 577-592.

Bhalla, U.S. (2003).
Temporal computation by synaptic signaling pathways.
Journal of Chemical Neuroanatomy (In press).

Bhalla, U.S. (2003).
Managing models of signaling networks.
Neurocomputing, 52, 215-220.

Bhalla, U.S. (2003).
Understanding complex signaling networks through models and metaphors.
Progress in Biophysics & Molecular Biology, 81: 45-65 (Review)

Bhutani, N. and Udgaonkar, J.B. (2003).
Folding subdomains of thioredoxin detected by native state hydrogen exchange.
Protein Science, 12, 1719-1731.

Chakrabarti, O. and Krishna, S. (2003).
Molecular interactions of “high risk” human papillomaviruses E6 and 
E7 oncoproteins: implications in tumor progression.
Journal of Biosciences, 28, 337-348.

Chakrabarti, S. and Sowdhamini, R. (2003).
Potentials of fold recognition methods in structure prediction of homoserine lactone synthases.
In: Recent trends in Bioinformatics, ed. Shanmughael, P., Madurai Kamaraj University, Madurai

Chakrabarti, S. and Sowdhamini, R. (2003).
Functional sites and evolutionary connections of acylhomoserine lactone synthases.
Protein Engineering, 16 (4): 271-278

Chakrabarti, S., Venkataramanan, K. and Sowdhamini, R. (2003).
PASS2: Structural motifs of protein superfamilies.
Nucleic Acids Research,http://www3.oup.co.uk/nar/database/summary/275

Deshmukh, S.S, and Bhalla, U.S. (2003).
Representation of odor habituation and timing in the hippocampus.
The Journal of Neuroscience, 23 (5): 1903-1915.

Dhawan, R., Varshney, A., Mathew, M.K. and Lala, A.K. (2003).
BTK-2, a new inhibitor of the Kv1.1 potassium channel purified from Indian 
scorpion Buthus tamulus.
FEBS Letters, 539: 7-13.

Ghazi, A. and VijayRaghavan, K. (2003).
Myogenesis in Drosophila.
Proceedings in Indian National Science Academy B, 5, 691-702.

Godbole, A., Varghese, J., Sarin, A. and Mathew, M.K. (2003).
VDAC is a conserved element of death pathways in plant and animal systems.
Biochimica et Biophysica Acta, 1642, 87-96.

Guha, A., Sriram, V., Krishnan K.S. and Mayor, S. (2003).
shibire mutations reveal distinct dyanmin-independent and - dependent 
endocytic pathways in primary cultures of Drosophila hemocytes,
Journal of Cell Science 2003, 116, 3373-3386.

Ghazi, A., Paul, L. and VijayRaghavan, K. (2003).
Prepattern genes and signaling molecules regulate stripe expression to 
specify Drosophila flight muscle attachment sites.
Mechanisms of Development, 120, 519-528.

Hasan, G. (2003).
Biological implications of Inositol 1,4,5-trisphosphate signaling from genetic 
studies in multicellular organisms.
Proceedings of the Indian National Science Academy B69, 741-752.

Hatwalne, Y., Ramaswamy, S., Rao, M. and Simha, R.A. (2003).
Rheology of active particle suspensions.
lanl eprint: cond-mat/0308529.

Hussaini, A., Krishnan, P., Abhishek, V. and Siddiqi, O. (2003).
A rapid method for measuring olfactory responses of Drosophila larva.
Current Science, 85, 101-102.

Jhaveri, D. and Rodrigues, V. (2003).
Perchance to smell.
Proceedings of the Indian National Science Academy B, 69, 29-39.

Joshi, R., Venkatesh, K., Srinivas, R., Nair, S. and Hasan G. (2003).
Genetic dissection of ltpr gene function reveals a vital requirement in aminergic 
cells of Drosophila larvae.
Genetics, 166, 225-236.

Juneja, J. and Udgaonkar, J.B. (2003).
NMR studies of protein folding.
Current Science, 84, 157-172.

Krishnan, K.S. (2003).
Principles of Animal Motion.
Current Science, 85, 97-98

Mallik, R., Udgaonkar, J.B. and Krishnamoorthy, G. (2003).
Kinetics of proton transfer in a green fluorescent protein: a laser-induced pH jump study.
Proceedings of the Indian Academy of Sciences (Chemical Sciences). 115, 307 - 317.

Nair, P., Somasundaram, K. and Krishna. S. (2003).
Activated Notch1 through PKB/Akt inhibits p53 induced apoptosis and sustains 
transformation by HPV 16 E6 and E7 oncogenes.
Journal of Virology, 77, 7106-7112.

Pollock, V. P., Radford, J.C., Pyne, S., Hasan, G., Dow, J.A.T. and Davies, S-A. (2003).
norpA and itpr mutants reveal roles for phospholipase C and inositol 1, 4, 
5 trisphosphate receptor in Drosophila melanogaster renal function.
Journal of Experimental Biology, 206, 901-911.

Rami, B. and Udgaonkar, J.B. (2003).
Dynamics of the core tryptophan during the formation of a productive 
molten globule intermediate of barstar.
Biochemistry, 42, 7986-8000.

Richa Rikhy, Mani Ramaswami and K. S. Krishnan (2003).
A temperature sensitive allele of Drosophila Ses B reveals acute functions for 
the mitochondrial adenine nucleotide translocase in synaptic transmission and Dynamin regulation
Genetics, 165, 1243-53.

Richa Rikhy and K. S. Krishnan (2003).
Cellular Traffic: A synaptic detour.
Proc. Ind. Natl. Sci. Acad B, 69, 463-499.

Roopa, T and Shivashankar, G.V. (2003).
Nanomechanics of membrane tubulation and DNA assembly.
Applied Physics Letters, 82, 1631-1633.

Sade, H. and Sarin, A. (2003).
Interleukin-7 blocks caspase-independent apoptosis in mature T cells via 
phosphatidylinositol-3 kinase (PI-3K)-mediated survival signalling.
European Journal of Immunology, 33, 913-919.

Sade, H. and Sarin, A. (2003).
Reactive oxygen species regulate quiescent T cell apoptosis via the BH3-only 
pro-apoptotic protein BIM.
Cell Death and Differentiation 11, 416-23.

Sandhya, S., Kishore, S., Sowdhamini, R. and Srinivasan, N. (2003)
Effective detection of remote homologues by searching in sequence dataset 
of a protein domain fold.
FEBS Letters 552, 225-30.

Sen, A., Reddy, G. V. and Rodrigues, V. (2003).
Combinatorial expression of Prospero, Seven-up and Elav, identify progenitor cell 
types during sense-organ differentiation in the Drosophila antenna.
Developmental Biology, 254, 79-92.

Sivakumaran, S., Hariharaputran, S., Mishra, J. and Bhalla, U.S. (2003).
The database of quantitative cellular signaling: Repository and analysis tools 
for chemical kinetic models of signaling networks. 
Bioinformatics, 19, 408-415.

Soni, G.V., Jaffar Ali, B.M., Hatwalne, Y. and Shivashankar, G.V. (2003).
Single particle tracking of correlated bacterial dynamics.
Biophysical Journal, 84, 2634-2637.

Sridevi, K. and Udgaonkar, J.B. (2003).
Surface expansion occurs faster than and independent of core solvation during 
the unfolding of barstar.
Biochemistry, 42, 1551-1563.

Sriram, V., Krishnan, K. S. and Mayor, S. (2003).
Deep-orange and carnation define distinct stages in late endosomal biogenesis in 
Drosophila melanogaster.
Journal of Cell Biology, 161, 593-607.

Sudarslal, S., Majumdar S, Ramasamy P, Dhawan R, Pal PP, Lala AK, Sikdar SK, 
Sarma SP, Krishnan KS and Balaram P.
Sodium channel modulating activity in a d-conotoxin from an Indian marine snail.
FEBS Lett. 553(1-2): 209-12, 2003.

Varghese, J., Khandre, N. and Sarin, A. (2003).
Caspase-3 activation is an early event and initiates apoptotic damage in a human 
leukemia cell line.
Apoptosis, 8, 363-373.

Varshney, A. and Mathew M.K. (2003).
Inward and outward potassium currents through the same chimæric human Kv Channel.
European Biophysics Journal, 32, 113-121.

Varshney, A. and Mathew, M.K. (2003).
A tale of two tails: Cytoplasmic termini and K+ channel function. 
Progress in Biophysics and Molecular Biology, 83, 153-170.

Vinayagam, A., Shi, J., Pugalenthi, G., Meenakshi, B., Blundell, T.L. and Sowdhamini, R. (2003).
DDBASE2.0: Updated domain database with improved methods for the identification 
of structural domains.
Bioinformatics 19, 1760-1764.

Vyas, A., Bernal, S. and Chattarji, S. (2003).
Effects of chronic stress on dendritic arborization in the central and extended amygdala.
Brain Research, 965, 290-294.

Vyas, A., Mitra, R. and Chattarji, S. (2003).
Enhanced anxiety and hypertrophy in basolateral amygdala neurons following 
chronic stress in rats. "The Amygdala in Brain Function: Basic and Clinical Approaches"
Annals of New York Academy of Sciences, 985, 554-555.