Publications - 2012
2012
1. Khan, Adil Ghani Sarangi, Manaswini, & Bhalla, Upinder Singh (2012). Rats track odour trails accurately using a multi-layered strategy with near-optimal sampling, Nature Communications, 3:703 | DOI
2. Chakraborty, Sumita and Hasan, Gaiti (2012). IP3R, store-operated Ca2+ entry and neuronal Ca2+ homoeostasis in Drosophila, Biochemical Society Transaction, 40, 279–281 | PMID
3. Lakshminarasimhan, Harini and Chattarji, Sumantra (2012). Stress Leads to Contrasting Effects on the Levels of Brain Derived Neurotrophic Factor in the Hippocampus and Amygdala. PLoS ONE, 7, 1, e30481 | PMID
4. Jayaram, V, Srinag, B.S., Kalthur, G., Krishnamurthy, H., Kumar, P. and Adiga, s.K. (2012). Poor sperm quality and advancing age are associated withincreased sperm DNa damage in infertile men. Andrologia. | PMID
5. Rai, Navneet, Anand,Rajat, Ramkumar, Krishna, Sreenivasan, Varun, Dabholkar, Sugat, Venkatesh, K.V., Thattai, Mukund. (2012). Prediction by Promoter Logic in Bacterial Quorum Sensing. PLoS Computational Biology, 8, 1, e1002361 | PMID
6. Keshari RS, Jyoti A, Kumar S, Dubey M, Verma A, Srinag BS, Krishnamurthy H, Barthwal MK, Dikshit M. (2012). Neutrophil Extracellular Traps Contain Mitochondrial as well as Nuclear DNA and Exhibit Inflammatory Potential. Cytometry, Part A, 81(3):238-47 | PMID
7. Saha, Sonali, Chakraborty, K., and Krishnan, Y. (2012). Tunable, colorimetri DNa based pH sensors mediated by A-Motif formation. Chemical communications, 48, 2513-2515 | PMID
8. Ghosh S, Saha S, Goswami D, Bilgrami S, Mayor S. (2012). Dynamic Imaging of Homo-FRET in Live Cells by Fluorescence Anisotropy Microscopy. Methods in Enzymology, 505, 291-327 | PMID
9. Maniar TA, Kaplan M, Wang GJ, Shen K, Wei L, Shaw JE, Koushika SP, Bargmann CI. (2012). UNC-33 (CRMP) and ankyrin organize microtubulesand localize kinesin to polarize axon-dendrite sorting. Nature Neuroscience, 15(1):48-56 | PMID
10. Martincorena I, Seshasayee ASN, Luscombe NM. (2012) Non-random mutation rates suggest a risk management strategy for evolution. Nature. 485, 95–98. PMID
11. Prieto AI, Kahramanoglou C, Ali RM, Fraser GM, Seshasayee ASN, Luscombe NM. (2012) Genomic analysis of DNA-binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12. Nucleic Acids Research. 40(8):3524-37 PMID
12. Anil VS, Kavitha PG, Kuruvilla S, Kumar P & Mathew MK (2012) Measurement of Cytosolic Ion Concentrations in Live Cells Book Chapter in “Methods in Molecular Biology”, F Maathuis ed, published by Humana Press, USA. In press
2012
1. Khan, Adil Ghani Sarangi, Manaswini, & Bhalla, Upinder Singh (2012). Rats track odour trails accurately using a multi-layered strategy with near-optimal sampling, Nature Communications, 3:703 | DOI
2. Chakraborty, Sumita and Hasan, Gaiti (2012). IP3R, store-operated Ca2+ entry and neuronal Ca2+ homoeostasis in Drosophila, Biochemical Society Transaction, 40, 279–281 | PMID
3. Lakshminarasimhan, Harini and Chattarji, Sumantra (2012). Stress Leads to Contrasting Effects on the Levels of Brain Derived Neurotrophic Factor in the Hippocampus and Amygdala. PLoS ONE, 7, 1, e30481 | PMID
4. Jayaram, V, Srinag, B.S., Kalthur, G., Krishnamurthy, H., Kumar, P. and Adiga, s.K. (2012). Poor sperm quality and advancing age are associated withincreased sperm DNa damage in infertile men. Andrologia. | PMID
5. Rai, Navneet, Anand,Rajat, Ramkumar, Krishna, Sreenivasan, Varun, Dabholkar, Sugat, Venkatesh, K.V., Thattai, Mukund. (2012). Prediction by Promoter Logic in Bacterial Quorum Sensing. PLoS Computational Biology, 8, 1, e1002361 | PMID
6. Keshari RS, Jyoti A, Kumar S, Dubey M, Verma A, Srinag BS, Krishnamurthy H, Barthwal MK, Dikshit M. (2012). Neutrophil Extracellular Traps Contain Mitochondrial as well as Nuclear DNA and Exhibit Inflammatory Potential. Cytometry, Part A, 81(3):238-47 | PMID
7. Saha, Sonali, Chakraborty, K., and Krishnan, Y. (2012). Tunable, colorimetri DNa based pH sensors mediated by A-Motif formation. Chemical communications, 48, 2513-2515 | PMID
8. Ghosh S, Saha S, Goswami D, Bilgrami S, Mayor S. (2012). Dynamic Imaging of Homo-FRET in Live Cells by Fluorescence Anisotropy Microscopy. Methods in Enzymology, 505, 291-327 | PMID
9. Maniar TA, Kaplan M, Wang GJ, Shen K, Wei L, Shaw JE, Koushika SP, Bargmann CI. (2012). UNC-33 (CRMP) and ankyrin organize microtubulesand localize kinesin to polarize axon-dendrite sorting. Nature Neuroscience, 15(1):48-56 | PMID
10. Martincorena I, Seshasayee ASN, Luscombe NM. (2012) Non-random mutation rates suggest a risk management strategy for evolution. Nature. 485, 95–98. PMID
11. Prieto AI, Kahramanoglou C, Ali RM, Fraser GM, Seshasayee ASN, Luscombe NM. (2012) Genomic analysis of DNA-binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12. Nucleic Acids Research. 40(8):3524-37 PMID
12. Anil VS, Kavitha PG, Kuruvilla S, Kumar P & Mathew MK (2012) Measurement of Cytosolic Ion Concentrations in Live Cells Book Chapter in “Methods in Molecular Biology”, F Maathuis ed, published by Humana Press, USA. In press
13. Kavitha PG, Miller T, Mathew MK & Maathuis FJM (2012) Rice cultivars with differing salt tolerance contain similar cation channels in their root cells. J Exp Botany. 63, 3289–3296| PMID
14. Wani, Ajazul Hamid and Udgaonkar, Jayant B. (2012) Mass spectrometry studies of protein folding. Current Science, 102, 2, 245
15. Preethy CP, Padmapriya1 R, Periasamy1 VS, Riyasdeen A, Srinag S, Krishnamurthy H, Alshatwi AA, Akbarsha MA (2012) Antiproliferative property of n-hexane and chloroform extracts of Anisomeles malabarica (L). R. Br. in HPV16-positive human cervical cancer cells. Journal of Pharmacology & Pharmacotherapeutics 3(1):26-34. | PMID
16. Herzog R, Schuhmann K, Schwudke D, Sampaio JL, Bornstein SR, Schroeder M, Shevchenko A. (2012) LipidXplorer: A Software for Consensual Cross-Platform Lipidomics. PLoS One. 7(1):e29851. PMID
17. Divya P SyamalaDevi, Jim Spudich and R. Sowdhamini (2011) Structural and Functional Insights on the Myosin Superfamily. Bioinformatics and Biology Insights. 6:11-21 | PMID
18. Jha, Santosh Kumar., Deepalakshmi, Putchen Dakshinamoorthy and Udgaonkar, Jayant B. (2012). Characterization of Deamidation of Barstar using electrospray Ionisation Quadrupole Time of Flight Mass Spectrometry, which stabilizes an Equilibrium Unfolding Intermediate. Protein Science, 21(5):633-46 | PMID
19. Ramachandran, Gayathri and. Udgaonkar, Jayant B. (2012). Evidence for the Existence of a Secondary Pathway for Fibril Growth during the Aggregation of Tau. Journal of Molecular Biology, 421(2-3):296-314 | PMID
20. Agrawal, N. and Hasan, G. (2012) Drosophila InsP3R mutants and their effects on cellular and systemic physiology. WIREs Membr Transp Signal 1: 70-77. Invited review.
21. Harini, K. and Sowdhamini, R. (2012) Molecular modelling of oligomeric states of DmOR83b, an olfactory receptor in D. melanogaster. Bioinformatics and Biology Insights, 6:33-47 | PMID
22. Djamel Harbi, Marimuthu Parthiban, Deena M. A. Gendoo1, Sepehr Ehsani, Manish Kumar, Gerold Schmitt-Ulms, Ramanathan Sowdhamini, Paul M. Harrison (2012) PrionHome: A Database of Prions and Other Sequences Relevant to Prion Phenomena. PloS One, 7(2):e31785 | PMID
23. Aswin Sai Narain Seshasayee, Parul Singh and Sandeep Krishna (2012) Context-dependent conservation of DNA methyltransferases in bacteria. Nucleic Acids Res. 40(15):7066-73 | PMID
24. Sharma, A., Subramanian, V. and Nair, D. T.(2012) The PAD region in the mycobacterial dinB homolog MsPolIV exhibits positional heterogeneity. Acta Crystallogr D Biol Crystallogr. 68(Pt 8):960-7 | PMID
25. Sharma, A. and Nair, D. T.^§ (2012) MsDpo4---a DinB Homolog from Mycobacterium smegmatis---is an Error-Prone DNA Polymerase that can Promote G:T and T:G Mismatches. Journal of Nucleic Acids, vol. 2012, Article ID 285481. | PMID
26. Gupta, Soumya., Marcel, Nimi., Talwar, Shefali., Garg, Megha., Indulaxmi, R., Perumalsamy, Lakshmi R., Sarin, Apurva and Shivashankar, G. V. (2012). Developmental Heterogeneity in DNA Packaging Patterns Influences T-Cell Activation and Transmigration, PLOS ONE, 7, 9, e43718 | PMID
27. Jain, Shweta and Udgaonkar, Jayant B. (2012). Prion protein aggregation. Current Science, 101, 10, 1311
28. Hasan G (2012) Intracellular signaling in neurons: unraveling specificity, compensatory mechanisms and essential gene function. Curr Opin Neurobiol. 23: 1-6 | PMID
29. Sufia Sadaf, Serge Birman, Gaiti Hasan (2012). Synaptic Activity in Serotonergic Neurons Is Required for Air-Puff Stimulated Flight in Drosophila melanogaster. PLoS ONE 7(9): e46405
30. Kumar S, Dubey AK, Karmakar R, Kini RK, Mathew MK & Prakash HS. (2012) Inhibition of TMV multiplication by siRNA constructs against TOM1 and TOM3 genes of Capsicum annuum. Journal of Virological Methods, 186(1-2):78-85.
31. Kumar S, Dubey AK, Karmakar R, Kini RK, Mathew MK & Prakash HS. (2012) Inhibition of virus infection by transient expression of short hairpin RNA targeting methyltransferase domain of Tobacco mosaic virus replicase, Phytoparasitica DOI 10.1007/s12600-012-0256-y
32. Singh J,. Sabareesan AT, Mathew MK & Udgaonkar JB (2012) Development of the structural core and of conformational heterogeneity during the conversion of oligomers of the mouse prion protein to worm-like amyloid fibrils J Mol Biol 423, 217-231| PMID
33. Chakraborty, S and Hasan, G. (2012). Functional complementation of Drosophila itpr mutants by Rat IP_3 R1. J. Neurogenet, 26(3-4):328-37 | PMID
34. Pillai AG, Anilkumar S, Chattarji S. (2012) The Same Antidepressant Elicits Contrasting Patterns of Synaptic Changes in the Amygdala vs Hippocampus. Neuropsychopharmacology. 37(12):2702-11 | PMID
35. Rao, Rajnish P, Shobha Anilkumar, Bruce S McEwen, and Sumantra Chattarji. (2012) Glucocorticoids Protect Against the Delayed Behavioral and Cellular Effects of Acute Stress on the Amygdala. Biological Psychiatr, 72(6):466-75. | PMID
36. Malik, Ruchi, and Sumantra Chattarji. (2012) Enhanced Intrinsic Excitability and EPSP-spike Coupling Accompany Enriched Environment-induced Facilitation of LTP in Hippocampal CA1 Pyramidal Neurons. Journal of Neurophysiology 107, no. 5: 1366–1378. | PMID
37. Kahramanoglou C, Prieto AI, Khedkar S, Haase B, Gupta A, Benes V, Fraser GM, Luscombe NM, Seshasayee AS. (2012) Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription. Nat Commun.; 3:886 | PMID
38. Prabhakara S, Khedkar S, Loganathan RM, Chandana S, Gowda M, Arakere G, Seshasayee AS. (2012) Draft genome sequence of Staphylococcus aureus 118 (ST772), a major disease clone from India. J Bacteriol. 194(14):3727-8 | PMID
39. M. Thattai.(2012) Using topology to tame the complex biochemistry of genetic networks. Phil. Trans. Roy. Soc. A, 371(1984):20110548.
40. F. Brodsky, M. Thattai, S. Mayor. (2012) Evolutionary cell biology: Lessons from diversity. Nature Cell Biol. 14(7):651 | PMID
41. Bhatia, D., Chakraborty, S. and Krishnan, Y. (2012) Gene delivery: Designer DNA give RNAi more spine. Nature Nanotechnology, 7, 344-346. | PMID
42. Chakraborty, S., Mehtab, S., Patwardhan, A.R., Krishnan, Y. (2012) Pri-miR-17-92a Transcript folds into a tertiary structure and autoregulates its processing. RNA 18, 1014-1028. | PMID
43. Velho, N., Ratnam, J., Srinivasan, U. & Sankaran, M. (2012). Shifts in community structure of tropical trees and avian frugivores in forests recovering from past logging. Biological Conservation 153: 32 - 40.
44. Adurthi S, Mukherjee G, Krishnamurthy H, Krishna S, Bafna UD, Uma Devi K, Jayshree RS (2012) Functional Tumor Infiltrating Th1 and Th2 Effectors In Large Early - Stage Cervical Cancer Are Suppressed By Regulatory T Cells. Int J Gynecol Cancer, 22, 7:1130-7 | PMID
45. Aghera, N. and Udgaonkar, J.B. (2012) Kinetic studies of the folding of heterodimeric monellin: evidence for switching between alternative parallel pathways. J Mol Biol. ,420, 3:235-50 | PMID
46. Bagepally, B.S,, Halahalli, H., John, P.J, Lakshminarayan. K., Purushottam, M., Mukherjee, O., Sivakumar, P.T., Bharath, S., Jain, S. and Varghese, M (2012). Apolipoprotein E4 and brain white matter integrity in Alzheimer’s Disease: Tract based spatial statistics under 3- tesla MRI. Neurodegener Dis. 10,(1-4): 145-8. | PMID
47. Brierley, D.J., Rathore, K., VijayRaghavan, K. and Williams, D.W. (2012). Developmental origins and architecture of Drosophila leg motoneurons. J Comp Neurol., 520(8):1629-49. | PMID
48. Dasgupta A. and Udgaonkar J. B. (2012). Four-State Folding of a SH3 domain: salt-induced modulation of the stabilities of intermediates and native state. Biochemistry, 51, 4723–4734. | PMID
49. Gandhimathi, A., Nair, A.G. And Sowdhamini, R. (2012) Comparison of structure based sequence alignment programs for protein domain superfamilies with multiple members. Advances in Computing, 2(2): 23-28..
50. Gromiha, M.M., Harini, K., Sowdhamini, R. and Fukui, K. (2012). Relationship between amino acid properties and functional parameters in olfactory receptors and discrimination of mutant with enhanced specificity. BMC Bioinformatics 13(Suppl 7):S1 | PMID
51. Gupta K, Kumar M, Chandrashekara K, Krishnan KS, Balaram P. ( 2012) Combined electron transfer dissociation-collision-induced dissociation fragmentation in the mass spectrometric distinction of leucine, isoleucine, and hydroxyproline residues in Peptide natural products. J Proteome Research, 11(2):515-22.| PMID
52. Harbi, D., Parthiban, M., Deena M. A., Gendoo1, S. E., Kumar, M., Schmitt-Ulms, G., Sowdhamini, R. and Harrison, P.M. (2012) PrionHome: A Database of Prions and Other Sequences Relevant to Prion Phenomena. PloS One, 7,2:e31785. | PMID
53. Karnawat, V., Jayanth, N. and Puranik, M. (2012). Substrate recognition in multi-substrate nucleic acid binding enzymes. Current Science, 102,2:298
54. Krishnan, A., Prabhakar, S., Sudarsan, S. and Sane, S. P. (2012) Neural mechanisms of antennal positioning in flying moths. Journal of Experimental Biology, 215(Pt 17):3096-105 | PMID
55. Krishnan K S ( 2012) The Illustrated Book of South Indian Snakes by B. Vijayaraghavan and S. R. Ganesh, Current Science,102,06:923) (Review)
56. Kumar, A and Shivashankar, G.V.(2012). Mechanical force alters morphogenetic movements and segmental gene expression patterns during Drosophila embryogenesis. PloS One, 7(3): e33089 | PMID
57. Malhotra, S. and Sowdhamini, R. (2012) Re-visiting protein-centric two-tier classification of existing DNA-protein complexes. BMC Bioinformatics ,13:165 | PMID
58. Nagarathnam, B., Kalaimathy, S., Balakrishnan, V and Sowdhamini, R. (2012) Cross-genome clustering of human and C. elegans G-protein coupled receptors. Evolutionary Bioinformatics, 8: 229–259. | PMID
59. Parameshwaran, D., Crone, N.E. and Thiagarajan, T.C. (2012). Coherence Potentials Encode Simple Human Sensorimotor Behavior. PloS One, 7,2: e30514. | PMID
60. Roy, S. and VijayRaghavan, K.(2012). Developmental biology: taking flight. Curr Biol. 22, 2:R63-5. | PMID
61. Srinivasan, U and Quader, S. (2012). To eat and not be eaten: modelling resources and safety in multi-species animal groups. PLoS ONE. 7,:e42071 | PMID
62. Sudhakaran, I.P., Holohan, E.E., Osman, S., Rodrigues, V., Vijayraghavan, K. and Ramaswami, M. (2012). Plasticity of recurrent inhibition in the Drosophila antennal lobe. J Neurosci. 23;32(21):7225-31. | PMID
63. Sureshkumar, R., Bharath, S., Jain, S., Prakash, O., Purushottam, M., Thennarasu, K., Mukherjee, O., Sivakumar, P.T. and Varghese, M. (2012). ApoE and late onset depression in Indian population. J Affec Disd. 136, 244-248. | PMID
64. Sankaran, M. and McNaughton, S. J. (2012). Terrestrial plant-herbivore interactions: Integrating across multiple determinants and trophic levels. In Vegetation Ecology 2nd edition (ed.) van der Maarel, E. Blackwell Science, Oxford.
65. Sankaran, M. a Ratnam, J. (2012). African and Asian Savannas. In Encyclopedia of Biodiversity 2nd Edition (ed) S. A. Levin, Academic Press.
66. Bhalla, U.S. (2012). Still looking for the memories: Molecules and synaptic plasticity. In: 20 Years of Computational Neuroscience, Ed. Bower, JM. Springer.
67. Bhalla, U.S. (2012). Multi-compartmental models of neurons. In: Computational Systems Neurobiology, Ed. Le Novère. Springer, 2012, pp 193-225. ISBN: 978-94-007-3857-7
68. Shameer, K. and Sowdhamini, R. (2012) Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome. Journal of Clinical Bioinformatics, 2,1:8 (epub ahead). | PMID
69. Srinivasan, U., Raza, R.H. and Quader, S. (2012). Patterns of species participation across multiple mixed-species flock types in a tropical forest in northeastern India. Journal of Natural History, 46 (43-45): 2749-2762
70. Paranjpe P, Rodrigues V, VijayRaghavan K, Ramaswami M. (2012) Gustatory habituation in Drosophila relies on rutabaga (adenylate cyclase)-dependent plasticity of GABAergic inhibitory neurons. Learn Mem. Nov 20;19(12):627-35 | PMID
71. Guruharsha KG, Obar RA, Mintseris J, Aishwarya K, Krishnan RT, Vijayraghavan K, Artavanis-Tsakonas (2012) Drosophila protein interaction map (DPiM): a paradigm for metazoan protein complex interactions. Fly (Austin). Oct-Dec;6(4):246-53. | PMID
72. Badsha, F., Kain, P., Prabhakar, S., Sundaram, S., Padinjat, R., Rodrigues, V and Hasan, G. (2012). Mutants in Drosophila TRPC Channels Reduce Olfactory Sensitivity to Carbon dioxide. /PLoS One /*7(11)* | PMID
73. Perumalsamy LR, Marcel N, Kulkarni K, Radtke F and Sarin A (2012) Distinct spatial and molecular features of Notch pathway assembly in Regulatory T-cells. Science Signaling, 5 (234), ra53. | PMID
74. Gupta S*, Marcel N*, Sarin A and Shivashankar GV (2012) Role of actin dependent nuclear deformation in regulating early gene expression. PLOS One. 7(12):e53031 | PMID
75. Kunte, K., S. Sondhi, B. M. Sangma, R. Lovalekar, K. Tokekar, and G. Agavekar. (2012) Butterflies of the Garo Hills of Meghalaya, northeastern India: Their diversity and conservation. Journal of Threatened Taxa,4:2933-2992.
76. Rai, S., K. D. Bhutia, K. Kunte. (2012). Recent sightings of two very rare butterflies, Lethe margaritae Elwes, 1882 and Neptis nycteus de Nicéville, 1890, from Sikkim, eastern Himalaya, India. Journal of Threatened Taxa, 4:3319-3326.
77. Krishnan KS, Ramaswami M, Wu CF. (2012) Obaid Siddiqi at 80 and neurogenetics in India. J Neurogenet. 2012 Sep;26(3-4): 255-6. | PMID
78. Sanyal S, Krishnan KS (2012) Genetic modifiers of comatose mutations in Drosophila: insights into neuronal NSF (N-ethylmaleimide-sensitive fusion factor) function. J Neurogenet. 2012 Sep;26(3-4):348-59. | PMID
79. Saha, S. and Krishnan, Y. (2012) pH sensitive DNA devices. In Fox, K.R., Brown, T (ed), DNA Conjugates and Sensors. Royal Society of Chemistry publishing, Cambridge, pp166-183.
80. Krishnan, Y., Bathe, M. (2012) Designer nucleic acids to probe and program the cell. Trends in Cell Biology, 22, 624-633. | PMID
81. Thirumalai V, Behrend RM, Clendenen N, Liu WF and O’Donovan MJ (2012) Preservation of VGLUT1 synapses on ventral calbindin-immunoreactive interneurons and normal locomotor function in a mouse model of Spinal Muscular Atrophy. J. Neurophysiol. 109(3):702-10. | PMID
82. Thirumalai V (2012) Assembling neural circuits for generating movement. J. Ind. Inst. Sci. 92(4), 411-426.
83. Khader Shameer and R. Sowdhamini (2012) Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome. Journal of Clinical Bioinformatics, 3;2(1):8 | PMID
84. Sony Malhotra and R. Sowdhamini (2012) Re-visiting protein-centric two-tier classification of existing DNA-protein complexes. BMC Bioinformatics, 13:165. | PMID
85. B Nagarathnam, S Kalaimathy, V Balakrishnan and Ramanathan Sowdhamini (2012) Cross-genome clustering of human and C. elegans G-protein coupled receptors. Evolutionary Bioinformatics 8:229-59. | PMID
86. A. Gandhimathi, Anu G. Nair, R. Sowdhamini. (2012) Comparison of structure based sequence alignment programs for protein domain superfamilies with multiple members. Advances in Computing, 2(2): 23-28.
87. S. Sandhya, R. Mudgal, C. Jayadev, K.R. Abhinandan, R. Sowdhamini and N. Srinivasan (2012) Cascaded walks in protein sequence space: Use of artificial sequences in remote homology detection between natural proteins. Mol. BioSystems, 8(8):2076-84. | PMID
88. M Michael Gromiha, K Harini, R Sowdhamini and Kazuhiko Fukui (202) Relationship between amino acid properties and functional parameters in olfactory receptors and discrimination of mutants with enhanced specificity. BMC Bioinformatics, 13(Suppl 7):S1 doi:10.1186/1471-2105-13-S7-S1 | PMID
89. Prashant Shingate and R. Sowdhamini (2012) Analysis of domain swapped oligomers reveal local sequence preferences and structural imprints at the linker regions and swapped interfaces. PLoS One, 7(7): e39305. doi:10.1371/ journal.pone.0039305 | PMID
90. Margaret Sunitha S, John A. Mercer, James A. Spudich and Ramanathan Sowdhamini (2012) ntegrative structural modelling of the cardiac thin filament: energetics at the interface and conservation patterns reveal a spotlight on period 2 of tropomyosin. Bioinformatics and Biology Insights 6:203-23. | PMID
91. Krishnan Harini, Sankar Kannan, Waturu Nemoto, Kazuhiko Fukui and Ramanathan Sowdhamini (2012) Residue conservation and dimer-interface analysis of olfactory receptor molecular models :100 OR models for the molecular biochemists. Journal of Molecular Biochemistry, 1, 161-170.
92. Margaret S Sunitha, Anu G Nair, Amol Charya, Kamalakar Jadhav, Sami Mukhopadhyay and Ramanathan Sowdhamini (2012) Structural attributes for the recognition of weak and anomalous regions in coiled-coils of myosins and other motor proteins. BMC Research Notes (2012) 5(1):530. | PMID
93. Divya P. Syamaladevi, Margaret Sunitha, S. Kalaimathy, Chandrashekar Chilamakuri Reddy, Mohammed Iftekhar, Naseer Shaik Pasha and R. Sowdhamini (2012) Myosinome: A database of myosins from select eukaryotic genomes to facilitate analysis of sequence-structure-function relationships. Bioinformatics and Biology Insights, 6:247-54. | PMID
94. Prashant Shingate, Atul K. Upadhyay, U.S. Raghavender and R. Sowdhamini (2012) Identification and Conformational Analysis of hinge regions in proteins that undergo domain swapping. “Biomolecular Forms and Functions” (Eds. M. Bansal and N. Srinivasan) (in press).
95. Badsha F, Kain P, Prabhakar S, Sundaram S, Raghu P, Rodrigues V, Hasan G. (2012) Mutants in Drosophila TRPC Channels Reduce Olfactory Sensitivity to Carbon Dioxide. PLoS One. 2012; 7(11): e49848.
96. Garner K, Hunt AN, Koster G, Somerharju P, Groves E, Li M, Raghu P, Holic R, Cockcroft S. (2012) Phosphatidylinositol transfer protein, cytoplasmic 1 (PITPNC1) binds and transfers Phosphatidic Acid. J.Biol.Chem. Sep 14; 287(38): 32263-7.
97. Georgiev P, Toscano S, Nair A, Hardie R, Raghu P. (2012) Identification of a suppressor of retinal degeneration in Drosophila photoreceptors. J. Neurogenet. Sep 26 (3-4): 338-47.
98. Raghu, P., Yadav, S and Mallampati, N. (2012) Lipid signalling in Drosophila photoreceptors. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. Vesicular Transport. 1821(8):1154-65.
13. Kavitha PG, Miller T, Mathew MK & Maathuis FJM (2012) Rice cultivars with differing salt tolerance contain similar cation channels in their root cells. J Exp Botany. 63, 3289–3296| PMID
14. Wani, Ajazul Hamid and Udgaonkar, Jayant B. (2012) Mass spectrometry studies of protein folding. Current Science, 102, 2, 245
15. Preethy CP, Padmapriya1 R, Periasamy1 VS, Riyasdeen A, Srinag S, Krishnamurthy H, Alshatwi AA, Akbarsha MA (2012) Antiproliferative property of n-hexane and chloroform extracts of Anisomeles malabarica (L). R. Br. in HPV16-positive human cervical cancer cells. Journal of Pharmacology & Pharmacotherapeutics 3(1):26-34. | PMID
16. Herzog R, Schuhmann K, Schwudke D, Sampaio JL, Bornstein SR, Schroeder M, Shevchenko A. (2012) LipidXplorer: A Software for Consensual Cross-Platform Lipidomics. PLoS One. 7(1):e29851. PMID
17. Divya P SyamalaDevi, Jim Spudich and R. Sowdhamini (2011) Structural and Functional Insights on the Myosin Superfamily. Bioinformatics and Biology Insights. 6:11-21 | PMID
18. Jha, Santosh Kumar., Deepalakshmi, Putchen Dakshinamoorthy and Udgaonkar, Jayant B. (2012). Characterization of Deamidation of Barstar using electrospray Ionisation Quadrupole Time of Flight Mass Spectrometry, which stabilizes an Equilibrium Unfolding Intermediate. Protein Science, 21(5):633-46 | PMID
19. Ramachandran, Gayathri and. Udgaonkar, Jayant B. (2012). Evidence for the Existence of a Secondary Pathway for Fibril Growth during the Aggregation of Tau. Journal of Molecular Biology, 421(2-3):296-314 | PMID
20. Agrawal, N. and Hasan, G. (2012) Drosophila InsP3R mutants and their effects on cellular and systemic physiology. WIREs Membr Transp Signal 1: 70-77. Invited review.
21. Harini, K. and Sowdhamini, R. (2012) Molecular modelling of oligomeric states of DmOR83b, an olfactory receptor in D. melanogaster. Bioinformatics and Biology Insights, 6:33-47 | PMID
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