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2023
Kumar R, Dhaka B, Sahoo S, Jolly MKumar, Sabarinathan R.  2023.  Prognostic association of immunoproteasome expression in solid tumours is governed by the immediate immune environment.. Mol Oncol.
Jain I, Tran PT.  2023.  Prolongation of mitosis is associated with enhanced endogenous DNA damage in fission yeast.. MicroPubl Biol. 2023
van Zanten T, Greeshma PS, Mayor S.  2023.  Quantitative fluorescence emission anisotropy microscopy for implementing homo-fluorescence resonance energy transfer measurements in living cells. Mol Biol Cell.. 34(6)
Chakraborty P., Deb B.K, Arige V., Musthafa T., Malik S., Yule D.I, Taylor C.W., Hasan G.  2023.  Regulation of store-operated Ca2+ entry by IP3 receptors independent of their ability to release Ca2.. Elife. 12(e80447)
Gautam S, Mahapa A, Yeramala L, Gandhi A, Krishnan S, Vinothkumar KR, Chatterji D.  2023.  Regulatory mechanisms of c-di-AMP synthase (MsDisA) protein from Mycobacterium smegmatis revealed by a structure - function analysis.. Protein Sci. :e4568.
Jain I, Rao M, Tran PT.  2023.  Reliable and robust control of nucleus centering is contingent on nonequilibrium force patterns.. iScience. 26(5):106665.
Kaushik A, Udgaonkar JB.  2023.  Replacement of the native cis prolines by alanine leads to simplification of the complex folding mechanism of a small globular protein.. Biophys J.
Bellur A, Das S, Jayaraman V, Behera S, Suryavanshi A, Balasubramanian S, Balaram P, Jindal G, Balaram H.  2023.  Revisiting the Burden Borne by Fumarase: Enzymatic Hydration of an Olefin.. Biochemistry.
Agashe D, Sane M, Singhal S.  2023.  Revisiting the Role of Genetic Variation in Adaptation. AMERICAN NATURALIST .
Da W., Rana S.K, Bawa K., Kunte K., Wang Z..  2023.  Roof of the world: Home and border in the genomic era. Molecular Ecology Resources.
Puri M, Srivathsa A, Karanth KK, Patel I, N. Kumar S.  2023.  Safe space in the woods: Mechanistic spatial models for predicting risks of human-bear conflicts in India. BIOTROPICA . 55(2):504-516.
Lamba S, Ganesan S, Daroch N, Paul K, Joshi SGopal, Sreenivas D, Nataraj A, Srikantaiah V, Mishra R, Ramakrishnan U et al..  2023.  SARS-CoV-2 infection dynamics and genomic surveillance to detect variants in wastewater - a longitudinal study in Bengaluru, India.. Lancet Reg Health Southeast Asia. :100151.
Sane M, Diwan GD, Bhat BA, Wahl LM, Agashe D.  2023.  Shifts in mutation spectra enhance access to beneficial mutations.. Proc Natl Acad Sci U S A.. 120(22):e2207355120.
Kamat A, Badrinarayanan A.  2023.  SOS-independent bacterial DNA damage responses: diverse mechanisms, unifying function.. Curr Opin Microbiol. 73:102323.
Kasturacharya N, Dhall JKaur, Hasan G.  2023.  A STIM dependent dopamine-neuropeptide axis maintains the larval drive to feed and grow in Drosophila.. PLoS Genet. 19(6):e1010435.
Vinothkumar KR.  2023.  Structural heterogeneity of the Rieske iron-sulfur protein in a yeast complex III.. IUCrJ. 10(Pt 1):1-3.
Tiwari V, Sowdhamini R.  2023.  Structural modelling and dynamics of full-length of TLR10 sheds light on possible modes of dimerization, ligand binding and mechanism of action.. Curr Res Struct Biol. 5:100097.
Krishnan H, Basak B, Nath VR, Mishra S, Raghu P.  2023.  Structural organization of RDGB (retinal degeneration B), a multi-domain lipid transfer protein: a molecular modelling and simulation based approach.. J Biomol Struct Dyn. :1-15.
Bhattacharyya T, Ghosh A, Verma S, Raghu P, Sowdhamini R.  2023.  Structural rationale to understand the effect of disease-associated mutations on Myotubularin.. Curr Res Struct Biol. 5:100100.
Ahmad M, Jha B, Bose S, Tiwari S, Dwivedy A, Kar D, Pal R, Mariadasse R, Parish T, Jeyakanthan J et al..  2023.  Structural snapshots of Mycobacterium tuberculosis enolase reveal dual mode of 2PG binding and its implication in enzyme catalysis.. IUCrJ. 10(Pt 6):738-753.
Tiwari V, Sowdhamini R.  2023.  Structure modelling of odorant receptor from and identification of potential repellent molecules.. Comput Struct Biotechnol J. 21:2204-2214.
Mayor S, Bhat A, Kusumi A.  2023.  A Survey of Models of Cell Membranes: Toward a New Understanding of Membrane Organization.. Cold Spring Harb Perspect Biol. 15(10)
Ananthamurthy KG, Bhalla US.  2023.  Synthetic Data Resource and Benchmarks for Time Cell Analysis and Detection Algorithms.. eNeuro.
Alam SSahajada M, Samanta A, Uddin F, Ali S, Hoque M.  2023.  Tanshinone IIA targeting cell signaling pathways: a plausible paradigm for cancer therapy.. Pharmacol Rep.
Basu DNath, Bhaumik V, Kunte K.  2023.  The tempo and mode of character evolution in the assembly of mimetic communities.. Proc Natl Acad Sci U S A. 120(1):e2203724120.
Shakeel M, Brockmann A.  2023.  Temporal effects of sugar intake on fly local search and honey bee dance behaviour.. J Comp Physiol A Neuroethol Sens Neural Behav Physiol.
Panicker D, Stafford KM.  2023.  Temporal variability of a soundscape near a mid-oceanic atoll in the northern Indian ocean. PROGRESS IN OCEANOGRAPHY . 214:103033.
Raju A, Xue BK, Leibler S.  2023.  A theoretical perspective on Waddington's genetic assimilation experiments.. Proc Natl Acad Sci U S A. 120(51):e2309760120.
Gilmour KM, Daley MA, Egginton S, Kelber A, McHenry MJ, Patek SN, Sane SP, Schulte PM, Terblanche JS, Wright PA et al..  2023.  Through the looking glass: attempting to predict future opportunities and challenges in experimental biology.. J Exp Biol. 226(24)
Rao R, Alcoverro T, Kongari P, Yoayela S, Arthur R, D'Souza E.  2023.  Tolerance to aerial exposure influences distributional patterns in multi-species intertidal seagrass meadows.. Mar Environ Res. 191:106146.
Srivathsa A, Ramachandran V, Saravanan P, Sureshbabu A, Ganguly D, Ramakrishnan U.  2023.  Topcats and underdogs: intraguild interactions among three apex carnivores across Asia's forestscapes.. Biol Rev Camb Philos Soc.
Wortel MT, Agashe D, Bailey SF, Bank C, Bisschop K, Blankers T, Cairns J, Colizzi ESandro, Cusseddu D, Desai MM et al..  2023.  Towards evolutionary predictions: Current promises and challenges.. Evol Appl. 16(1):3-21.
Shakeel M, Kaushik S, Tanimura T, Brockmann A, Kain P.  2023.  Tracking Sugar-Elicited Local Searching Behavior in Drosophila.. J Vis Exp. (201)
Mann R, Notani D.  2023.  Transcription factor condensates and signaling driven transcription.. Nucleus. 14(1):2205758.
Chauhan PKumar, Sowdhamini R.  2023.  Transcriptome data analysis of primary cardiomyopathies reveals perturbations in arachidonic acid metabolism.. Front Cardiovasc Med. 10:1110119.
Syiem BL, Driscoll DA, Vasudev D, Goswami VR.  2023.  Tropical agricultural wooded land uses support high site use of forest birds. Biological Conservation. 281:109986.
Nazareth O, Srivathsa A, Ramachandran V.  2023.  Trunks and treetops: integrating terrestrial and arboreal camera-trap surveys to document elusive mammal communities in India. MAMMAL RESEARCH.
Singh A, Soler JAntoni, Lauer J, Grill SW, Jahnel M, Zerial M, Thutupalli S.  2023.  Two-component molecular motor driven by a GTPase cycle. NATURE PHYSICS.
Viswan NAnn, Bhalla USingh.  2023.  Understanding molecular signaling cascades in neural disease using multi-resolution models.. Curr Opin Neurobiol. 83:102808.
Nandavaram A, Nandakumar A, Kashif GM, Sagar ALakshman, Shailaja G, Ramesh A, Siddavattam D.  2023.  Unusual Relationship between Iron Deprivation and Organophosphate Hydrolase Expression.. Appl Environ Microbiol. :e0190322.
Sreedharan V, Bhalla US, Ramakrishnan N.  2023.  Using sensitivity analyses to understand bistable system behavior.. BMC Bioinformatics. 24(1):136.
Ansil BR, George CElizabeth, Chandrasingh S, Viswanathan A, Thattai M, Raghu P, Devadiga S, Harikumar AGeetha, Harsha PKandi, Nair I et al..  2023.  Validating saliva as a biological sample for cost-effective, rapid and routine screening for SARS-CoV-2. INDIAN JOURNAL OF MEDICAL MICROBIOLOGY. 45(100384)
Sane SP, Manjunath M, Mukunda CL.  2023.  Vestibular feedback for flight control in hawkmoths.. Trends Neurosci.
Rao M.  2023.  A view from the President of the Indian Biophysical Society.. Biophys Rev. 15(3):305-306.
Stotrabhashyam S, Sharma N, Kumar A, Sinha A.  2023.  Winter foraging ecology of stump-tailed macaques in the Hollongapar Gibbon Sanctuary, Assam, India.. J Biosci. 48
2024
Vaishnav MS, Kumari N, Srikanta S, Simha V, Krishnaswamy PR, Balaram P, Bhat N.  2024.  Albumin Oxidation and Albumin Glycation Discordance During Type 2 Diabetes Therapy: Biological and Clinical Implications.. Metab Syndr Relat Disord. 22(5):372-384.
Rathod SG, Singh A, Mantri VA.  2024.  Ascertaining the spatiotemporal variations in seaweed assemblages associated with the endemic seaweed Ulva ovata along selected locations of the Gulf of Khambhat, India. AQUATIC ECOLOGY.
Raghu P, Sharma Y, Devi ABhuvanendr, Krishnan H.  2024.  Challenges and opportunities for discovering the biology of rare genetic diseases of the brain.. J Biosci. 49
Zhang C, Joseph AMary, Casini L, Collier J, Badrinarayanan A, Manley S.  2024.  Chromosome organization shapes replisome dynamics in Caulobacter crescentus.. Nat Commun. 15(1):3460.
Carvalho APaula S, Owens HL, St Laurent RA, Earl C, Dexter KM, Messcher RL, Willmott KR, Aduse-Poku K, Collins SC, Homziak NT et al..  2024.  Comprehensive phylogeny of Pieridae butterflies reveals strong correlation between diversification and temperature.. iScience. 27(4):109336.
Sharma A, Chandrashekar CR, Krishna S, Sowdhamini R.  2024.  Computational Analysis of the Accumulation of Mutations in Therapeutically Important RNA Viral Proteins During Pandemics with Special Emphasis on SARS-CoV-2.. J Mol Biol. 436(19):168716.
Singh A, Thutupalli S, Kumar M, Ameta S.  2024.  Constrained dynamics of DNA oligonucleotides in phase-separated droplets.. Biophys J.
Hussain N, Apotikar A, Pidathala S, Mukherjee S, Burada AP, Sikdar SK, Vinothkumar KR, Penmatsa A.  2024.  Cryo-EM structures of pannexin 1 and 3 reveal differences among pannexin isoforms.. Nat Commun. 15:2942.
Narah J, Streinzer M, Chakravorty J, Megu K, Spaethe J, Brockmann A, Schmitt T.  2024.  Cuticular Hydrocarbon Profiles of Himalayan Bumble Bees (Hymenoptera: Bombus Latreille) are Species-Specific and Show Elevational Variation.. J Chem Ecol.
Sreepadmanabh M, Arun AB, Bhattacharjee T.  2024.  Design approaches for 3D cell culture and 3D bioprinting platforms.. Biophys Rev (Melville). 5(2):021304.
Rana D, Sartor CC, Chiaverini L, Cushman SA, Kaszta Z, Ramakrishnan U., Macdonald DW.  2024.  Differentially biased sampling strategies reveal the non-stationarity of species distribution models for Indian small felids. ECOLOGICAL MODELLING. 493
Agrawal K, Prabhakar S, Bakthavachalu B, Chaturvedi D.  2024.  Distinct developmental patterns in Anopheles stephensi organ systems.. Dev Biol. 508:107-122.
Todisco V, Basu DNath, Prosser SWJ, Russell S, Mutanen M, Zilli A, Huertas B, Kunte K, Vane-Wright R.  2024.  DNA barcodes from over-a-century-old type specimens shed light on the taxonomy of a group of rare butterflies (Lepidoptera: Nymphalidae: Calinaginae).. PLoS One. 19(7):e0305825.
Theeyancheri L, Chaki S, Bhattacharjee T, Chakrabarti R.  2024.  Dynamic clustering of active rings. Phys. Rev. Research. 6(L012038 )
Rajput V, Das R, Pramanik R, Nannaware K, Sushma Y, Taji N, Rajput V, Rajkhowa R, Pacharne P, Shah P et al..  2024.  Early Detection of KP.2 SARS-CoV-2 Variant using Wastewater-based Genomic Surveillance in Pune, Maharashtra, India.. J Travel Med.
Kaur K, Chandel M, Munikrishnappa VKT, Kumar P, Sahu BK, Ahamed M, Manjunath S, Gorantla M, Olsson S, Muthusamy E et al..  2024.  Ecofriendly agriculture pest control using pheromone packed programed nanovolcanoes framed by graphene oxide. CLEAN TECHNOLOGIES AND ENVIRONMENTAL POLICY.
Kumar M, Murali A, Subramaniam AGopal, Singh R, Thutupalli S.  2024.  Emergent dynamics due to chemo-hydrodynamic self-interactions in active polymers.. Nat Commun. 15(1):4903.
Simões deOliveira L, O'Leary HE, Nawaz S, Loureiro R, Davenport EC, Baxter P, , Dando O, Perkins E, Peltier J et al..  2024.  Enhanced hippocampal LTP but normal NMDA receptor and AMPA receptor function in a rat model of CDKL5 deficiency disorder.. Mol Autism.. 15(1):28.
Maes S.L, Perring M.P, Cohen R., Akinnifesi F.K, Bargues-Tobella A., Bastin J.-f., Bauters M., Bernardino P.N, Brancalion P.HS, Bullock J.M et al..  2024.  Explore before you restore: Incorporating complex systems thinking in ecosystem restoration. JOURNAL OF APPLIED ECOLOGY .
Premageetha GThambraRaj, Vinothkumar KR, Bose S.  2024.  Exploring advances in single particle CryoEM with apoferritin: From blobs to true atomic resolution.. Int J Biochem Cell Biol. 169:106536.
Neethu K.C, Pushpadass HA, Franklin MEE, Krishnamurthy H..  2024.  Exploring oil absorption and distribution in immersion-fried pantoa (Indian dairy dessert): effects of frying media. Journal of Food Science and Technology.
Yadav S, Vinothkumar KR.  2024.  Factors affecting macromolecule orientations in thin films formed in cryo-EM.. Acta Crystallogr D Struct Biol. 80(Pt 7):535-550.
Chaba Z, Jain I, Tran PT.  2024.  Fission yeast spindle dynamics and chromosome segregation fidelity show distinct thermosensitivity.. MicroPubl Biol. 2024
Gupta D, Sane SP, Arakeri JH.  2024.  Generating controlled gust perturbations using vortex rings.. PLoS One. 19(7):e0305084.
Mishra S., Manohar V., Chandel S., Manoj T., Bhattacharya S., Hegde N., Nath V.R., Krishnan H., Wendling C., Mattia T.D. et al..  2024.  A genetic screen to uncover mechanisms underlying lipid transfer protein function at membrane contact sites . Life Sci Alliance. 7(6):e202302525.
Raju A, Siggia ED.  2024.  A geometrical model of cell fate specification in the mouse blastocyst.. Development. 151(8)
Marathe K, Maddison WP, Kunte K.  2024.  Ghatippuspaschima, a new species and genus of plexippine jumping spider from the Western Ghats of India (Salticidae, Plexippini, Plexippina).. Zookeys. 1191:89-103.
Werner S, Okenve-Ramos P, Hehlert P, Zitouni S, Priya P, Mendonça S, Sporbert A, Spalthoff C, Göpfert MC, Jana SChandra et al..  2024.  IFT88 maintains sensory function by localising signalling proteins along cilia.. Life Sci Alliance. 7(5)
Asokan MS, Joan RFlorina, Babji S, Dayma G, Nadukkandy P, Subrahmanyam V, Pandey A, Malagi G, Arya P, Mahajan V et al..  2024.  Immunogenicity of SARS-CoV-2 vaccines BBV152 (COVAXIN®) and ChAdOx1 nCoV-19 (COVISHIELD™) in seronegative and seropositive individuals in India: a multicentre, nonrandomised observational study.. Lancet Reg Health Southeast Asia. 22:100361.
Saha S, Krishnan H, Raghu P.  2024.  IMPA1 dependent regulation of phosphatidylinositol 4,5-bisphosphate and calcium signalling by lithium.. Life Sci Alliance. 7(2):e202302425.
Jain H, Ghosh S.  2024.  Imprinting reversible deformations on a compressed soft rod network. SOFT MATTER. 20(26)
Treidel LA, Deem KD, Salcedo MK, Dickinson MH, Bruce HS, Darveau C-A, Dickerson BH, Ellers O, Glass JR, Gordon CM et al..  2024.  Insect Flight: State of the Field and Future Directions.. Integr Comp Biol.
Liu X, Zhang Y, Wen Z, Hao Y, Banks CAS, Cesare J, Bhattacharya S, Arvindekar S, Lange JJ, Xie Y et al..  2024.  An integrated structural model of the DNA damage-responsive H3K4me3 binding WDR76:SPIN1 complex with the nucleosome.. Proc Natl Acad Sci U S A. 121(33):e2318601121.
Parvathy J, Yazhini A, Srinivasan N, Sowdhamini R.  2024.  Interfacial residues in protein-protein complexes are in the eyes of the beholder.. Proteins.
Dewan A, Jain C, Das M, Tripathi A, Sharma AKumar, Singh H, Malhotra N, Seshasayee ASai Narain, Chakrapani H, Singh A.  2024.  Intracellular peroxynitrite perturbs redox balance, bioenergetics, and Fe-S cluster homeostasis in Mycobacterium tuberculosis.. Redox Biol. 75:103285.
Hasan G.  2024.  IPRs and nSOCE-Tied Together at Two Ends.. Contact (Thousand Oaks). 7:25152564241231092.
Lu H, Twan WKyaw, Ikawa Y, Khare V, Mukherjee I, Schou KBødtker, Chua KXin, Aqasha A, Chakrabarti S, Hamada H et al..  2024.  Localisation and function of key axonemal microtubule inner proteins and dynein docking complex members reveal extensive diversity among vertebrate motile cilia.. Development. 151(14)
Varma A, Udupa S, Sengupta M, Ghosh PKumar, Thirumalai V.  2024.  A machine-learning tool to identify bistable states from calcium imaging data.. J Physiol.
Jha S, Bose S, Vinothkumar KR.  2024.  Modeling Ligands into Maps Derived from Electron Cryomicroscopy.. J Vis Exp. (209)
Chaitanya P, Vijayaraghavareddy P, Lekshmy S, Spoorthi N, Math RGH, Shinde DD, Struik PC, Sreeman S.  2024.  Molecular basis of distinct responses to drought between rice and wheat genotypes. Environmental and Experimental Botany. 221:105734.
Singh N, Kaushik R, Prakash A, Saini SSingh, Garg S, Adhikary A, Ladher RK.  2024.  Mosaic Atoh1 deletion in the chick auditory epithelium reveals a homeostatic mechanism to restore hair cell number.. Dev Biol. 516:35-46.
Prusty AD, Sane SP.  2024.  The motor apparatus of head movements in the Oleander hawkmoth (Daphnis nerii, Lepidoptera).. J Comp Neurol. 532(1):e25577.
Sane SP, Wehling R, Daniel T.  2024.  Multisensory integration in insect flight control.. Biol Lett. 20(1):20230565.
Garushyants SK, Sane M, Selifanova MV, Agashe D, Bazykin GA, Gelfand MS.  2024.  Mutational signatures in wild type Escherichia coli strains reveal predominance of DNA polymerase errors.. Genome Biol Evol.
Sondhi S, Efetov KA, Tarmann GM, Karmakar T, Pawar U, Kunte K.  2024.  A new species of Piarosoma Hampson, 1893 (Lepidoptera, Zygaenidae, Procridinae, Artonini) from Arunachal Pradesh, India.. Zootaxa. 5270(1):139-145.
Kunte K, Sengupta A, Pawar U, Nawge V.  2024.  A new species of silverline butterfly, Cigaritis Donzel, 1847 (Lepidoptera: Lycaenidae), from the Western Ghats biodiversity hotspot, India.. Zootaxa. 5399(1):85-95.
Subhadarshini S, Tandon H, Srinivasan N, Sowdhamini R.  2024.  Normal Mode Analysis Elicits Conformational Shifts in Proteins at Both Proximal and Distal Regions to the Phosphosite Stemming from Single-Site Phosphorylation.. ACS Omega. 9(23):24520-24537.
Arvindekar S, Pathak AS, Majila K, Viswanath S.  2024.  Optimizing representations for integrative structural modeling using Bayesian model selection.. Bioinformatics. 40(3)
Mitra R, Richhariya S, Hasan G.  2024.  Orai-mediated calcium entry determines activity of central dopaminergic neurons by regulation of gene expression.. Elife. 12
Gowda A, C ST, Anil VS, Raghavan S.  2024.  Phytosynthesis of silver nanoparticles using aqueous sandalwood (Santalum album L.) leaf extract: Divergent effects of SW-AgNPs on proliferating plant and cancer cells.. PLoS One. 19(4):e0300115.
G Sundar VHari, Madhu A, Archana A, Shivaprasad PV.  2024.  Plant histone variants at the nexus of chromatin readouts, stress and development.. Biochim Biophys Acta Gen Subj. 1868(2):130539.
Negi H, Ravichandran A, Dasgupta P, Reddy S, Das R.  2024.  Plasticity of the proteasome-targeting signal Fat10 enhances substrate degradation.. Elife. 13
Narayanan S, Varma A, Thirumalai V.  2024.  Predictive neural computations in the cerebellum contribute to motor planning and faster behavioral responses in larval zebrafish.. Sci Adv. 10(1):eadi6470.
Ganguly D, Srivathsa A.  2024.  Ratel Mellivora capensis in a human-dominated savanna landscape in Kachchh, Gujarat, India. Small Carnivore Conservation. 62
Chawla S, Oster H, Duffield GE, Maronde E, Guido ME, Chabot C, Dkhissi-Benyahya O, Provencio I, Goel N, Youngstedt SD et al..  2024.  Reflections on Several Landmark Advances in Circadian Biology.. J Circadian Rhythms. 22:1.

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