[ Author(Desc)] Title Type Year
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S
Seshasayee ASai Narain.  2018.  Reply to Jobling, "Ectopic Expression of the and Genes of the Cryptic Prophage Rac of K-12 May Be Toxic but Do They Really Encode Toxins?: a Case for Using Genetic Context To Understand Function". mSphere. 3(2)
Setty TGangi, Sarkar A, Coombes D, Dobson RCJ, Subramanian R.  2020.  Structure and Function of -Acetylmannosamine Kinases from Pathogenic Bacteria.. ACS Omega. 5(48):30923-30936.
Setua S, Enguita FJ, Chora ÂFerreira, Ranga-Prasad H, Lahree A, Marques S, Sundaramurthy V, Mota MM.  2020.  Disrupting Plasmodium UIS3-host LC3 interaction with a small molecule causes parasite elimination from host cells.. Commun Biol. 3(1):688.
Sezgin E, Levental I, Mayor S, Eggeling C.  2017.  The mystery of membrane organization: composition, regulation and roles of lipid rafts.. Nat Rev Mol Cell Biol.
K Shafi M, Sowdhamini R.  2022.  Computational analysis of potential candidate genes involved in the cold stress response of ten Rosaceae members.. BMC Genomics. 23(1):516.
K Shafi M, Sajeevan RSivarajan, Kouser S, Vishnuprasad CN, Sowdhamini R.  2022.  Transcriptome profiling of two Moringa species and insights into their antihyperglycemic activity.. BMC Plant Biol. 22(1):561.
K Shafi M, Joshi AG, Meenakshi I, Pasha SNaseer, Harini K, Mahita J, Sajeevan RSivarajan, Karpe SD, Ghosh P, Nitish S et al..  2020.  Dataset for the combined transcriptome assembly of and functional annotation.. Data Brief. 30:105416.
Shah A, Jain R, Brockmann A.  2018.  : A Candidate Transcription Factor Involved in Molecular Processes Underlying Time-Memory.. Front Psychol. 9:865.
Shakeel M, Brockmann A.  2023.  Temporal effects of sugar intake on fly local search and honey bee dance behaviour.. J Comp Physiol A Neuroethol Sens Neural Behav Physiol.
Shakeel M, Kaushik S, Tanimura T, Brockmann A, Kain P.  2023.  Tracking Sugar-Elicited Local Searching Behavior in Drosophila.. J Vis Exp. (201)
Shameer K, Tripathi LP, Kalari KR, Dudley JT, Sowdhamini R.  2016.  Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.. Brief Bioinform. 17(5):841-62.
Shameer K, Naika MBN, K Shafi M, Sowdhamini R.  2019.  Decoding systems biology of plant stress for sustainable agriculture development and optimized food production.. Prog Biophys Mol Biol. 145:19-39.
Sharda M, Badrinarayanan A, Seshasayee ASai Narain.  2020.  Evolutionary and Comparative analysis of bacterial Non-Homologous End Joining Repair.. Genome Biol Evol.
Shariq M, Sahasrabuddhe V, Krishna S, Radha S, Bellampalli R, Dwivedi A, Cheramangalam R, Reizis B, Hébert J, Ghosh HS.  2021.  Adult neural stem cells have latent inflammatory potential that is kept suppressed by to facilitate adult neurogenesis.. Sci Adv. 7(21)
Sharma SDas, Reddy BKumar, Pal R, Ritakari TE, Cooper JD, Selvaraj BT, Kind PC, Chandran S, Wyllie DJA, Chattarji S.  2023.  Astrocytes mediate cell non-autonomous correction of aberrant firing in human FXS neurons.. Cell Rep. 42(4):112344.
Sharma Y, Saha S, Joseph A, Krishnan H, Raghu P.  2020.  In vitro human stem cell derived cultures to monitor calcium signaling in neuronal development and function. Wellcome Open Res. 5:16.
Sharma S, Mathre S, Ramya V, Shinde D, Raghu P.  2019.  Phosphatidylinositol 5 Phosphate 4-Kinase Regulates Plasma-Membrane PIP Turnover and Insulin Signaling.. Cell Rep. 27(7):1979-1990.e7.
Sharma A, Tiwari V, Sowdhamini R.  2020.  Computational search for potential COVID-19 drugs from FDAapproved drugs and small molecules of natural origin identifies several anti-virals and plant products.. J Biosci. 45
Sharma S, Zajac M, Krishnan Y.  2020.  A DNA Aptamer for Cyclic Adenosine Monophosphate that Shows Adaptive Recognition.. Chembiochem. 21(1-2):157-162.
Sharma A, Krishna S, Sowdhamini R.  2023.  Bioinformatics analysis of mutations sheds light on the evolution of Dengue NS1 protein with implications in the identification of potential functional and druggable sites.. Mol Biol Evol.
Sharma A, Talimarada D, Yadav UPrasad, Singh N, A. Reddy S, Bag D, Biswas K, Baidya A, Borale AN, Shinde D et al..  2020.  Design and Synthesis of New Tubulin Polymerization Inhibitors Inspired from Combretastatin A-4: An Anticancer Agent. ChemistrySelect. 5(37):11560-11572.
Sharma A, Hasan G.  2020.  Modulation of flight and feeding behaviours requires presynaptic IPRs in dopaminergic neurons.. Elife. 9
Sharma SDas, Pal R, Reddy BKumar, Selvaraj BT, Raj N, Samaga KKumar, Srinivasan DJ, Ornelas L, Sareen D, Livesey MR et al..  2020.  Cortical neurons derived from human pluripotent stem cells lacking FMRP display altered spontaneous firing patterns.. Mol Autism. 11(1):52.
Sharma A, Chandrashekar CR, Krishna S, Sowdhamini R.  2024.  Computational Analysis of the Accumulation of Mutations in Therapeutically Important RNA Viral Proteins During Pandemics with Special Emphasis on SARS-CoV-2.. J Mol Biol. 436(19):168716.
Shashidhara LS, Joshi A.  2023.  Not teaching evolution is an injustice.. Science. 380(6652):1303.
Shee S, Veetil RT, Mohanraj K, Das M, Malhotra N, Bandopadhyay D, Beig H, Birua S, Niphadkar S, Nagarajan SNarayanan et al..  2023.  Biosensor-integrated transposon mutagenesis reveals as a coordinator of redox homeostasis in .. Elife. 12
Shettigar N, Joshi A, Dalmeida R, Gopalkrishna R, Chakravarthy A, Patnaik S, Mathew M, Palakodeti D, Gulyani A.  2017.  Hierarchies in light sensing and dynamic interactions between ocular and extraocular sensory networks in a flatworm.. Sci Adv. 3(7):e1603025.
Shetty R, Joshi D, Jain M, Vasudevan M, Paul JChrysolite, Bhat G, Banerjee P, Abe T, Kiyonari H, VijayRaghavan K et al..  2018.  Rudhira/BCAS3 is essential for mouse development and cardiovascular patterning.. Sci Rep. 8(1):5632.
Shingate P, Warwicker J, Sowdhamini R.  2015.  Energetic Calculations to Decipher pH-Dependent Oligomerization and Domain Swapping of Proteins.. PLoS One. 10(6):e0127716.
Shingate P, Upadhyay A, Khader S, Sowdhamini R.  2015.  172 Computational analysis and prediction of proteins that undergo domain swapping.. J Biomol Struct Dyn. 33 Suppl 1:112-3.
Shirke PUday, Goswami H, Kumar V, Shah D, Beri S, Das S, Bellare J, Mayor S, Venkatesh KV, Seth JR et al..  2021.  "Viscotaxis"- Directed Migration of Mesenchymal Stem Cells in Response to Loss Modulus Gradient.. Acta Biomater.
Shivakumaraswamy S, Kumar S, Bellur A, Polisetty SDev, Balaram H.  2022.  Mechanistic Insights into the Functioning of a Two-Subunit GMP Synthetase, an Allosterically Regulated, Ammonia Channeling Enzyme. BIOCHEMISTRY. 61(18):1988-2006.
Shivaprasad PV.  2019.  New clues into the mechanisms of rice domestication.. J Biosci. 44(2)
Shivaprasad PV, Hohn T, Akbergenov R.  2015.  Biochemical requirements for two Dicer-like activities from wheat germ.. PLoS One. 10(1):e0116736.
Shrivastava R, Köster D, Kalme S, Mayor S, Neerathilingam M.  2015.  Tailor-made ezrin actin binding domain to probe its interaction with actin in-vitro.. PLoS One. 10(4):e0123428.
Shukla A, Bhattacharyya A, Kuppusamy L, Srivas M, Thattai M.  2017.  Discovering vesicle traffic network constraints by model checking.. PLoS One. 12(7):e0180692.
Shukla A, Chattarji S.  2021.  Stressed rats fail to exhibit avoidance reactions to innately aversive social calls.. Neuropsychopharmacology.
Shukla H, Suryamohan K, Khan A, Mohan K, Perumal RC, Mathew OK, Menon R, Dixon MD, Muraleedharan M, Kuriakose B et al..  2022.  Near-chromosomal de novo assembly of Bengal tiger genome reveals genetic hallmarks of apex predation. . Gigascience. 12:giac112
Sidhanth C, Bindhya S, Krishnapriya S, Manasa P, Shabna A, Alifia J, Patole C, Kumar V, Garg M, Ganesan TS.  2022.  Phosphoproteome of signaling by ErbB2 in ovarian cancer cells.. Biochim Biophys Acta Proteins Proteom. :140768.
Sil P, Mateos N, Nath S, Buschow S, Manzo C, Suzuki KGN, Fujiwara T, Kusumi A, Garcia-Parajo MF, Mayor S.  2020.  Dynamic actin-mediated nano-scale clustering of CD44 regulates its meso-scale organization at the plasma membrane.. Mol Biol Cell. 31(7):561-579.
Silva AP, Mukherjee S, Ramakrishnan U, Fernandes C, Björklund M.  2020.  Closely related species show species-specific environmental responses and different spatial conservation needs: Prionailurus cats in the Indian subcontinent.. Sci Rep. 10(1):18705.
Simões deOliveira L, O'Leary HE, Nawaz S, Loureiro R, Davenport EC, Baxter P, , Dando O, Perkins E, Peltier J et al..  2024.  Enhanced hippocampal LTP but normal NMDA receptor and AMPA receptor function in a rat model of CDKL5 deficiency disorder.. Mol Autism.. 15(1):28.
Singh J, Udgaonkar JB.  2016.  The pathogenic mutation T182A converts the prion protein into a molten globule-like conformation whose misfolding to oligomers but not to fibrils is drastically accelerated.. Biochemistry. 55(3):459-69.
Singh A, Krishna S.  2019.  Immunomodulatory and Therapeutic Potential of Marine Flora Products in the Treatment of Cancer. Bioactive Natural Products for the Management of Cancer: from Bench to Bedside . :139-166.
Singh N, Kaushik R, Prakash A, Saini SSingh, Garg S, Adhikary A, Ladher RK.  2024.  Mosaic Atoh1 deletion in the chick auditory epithelium reveals a homeostatic mechanism to restore hair cell number.. Dev Biol. 516:35-46.
Singh A, Thakur NL.  2021.  Allelopathic interaction among rocky intertidal invertebrates: sponge Cinachyrella cf. cavernosa and Zooxanthellate zoanthids Zoanthus sansibaricus. Hydrobiologia.
Singh J, Udgaonkar JB.  2015.  Structural effects of multiple pathogenic mutations suggest a model for the initiation of misfolding of the prion protein.. Angew Chem Int Ed Engl. 54(26):7529-33.
Singh D, Bhalla USingh.  2018.  Subunit exchange enhances information retention by CaMKII in dendritic spines.. Elife. 7
Singh P, Seshasayee ASai Narain.  2017.  Nucleoid-Associated Proteins: Genome Level Occupancy and Expression Analysis.. Methods Mol Biol. 1624:85-97.
Singh G, George G, Raja SO, Kandaswamy P, Kumar M, Thutupalli S, Laxman S, Gulyani A.  2023.  A molecular rotor FLIM probe reveals dynamic coupling between mitochondrial inner membrane fluidity and cellular respiration.. Proc Natl Acad Sci U S A. 120(24):e2213241120.
Singh A, Vashistha N, Heck J, Tang X, Wipf P, Brodsky JL, Hampton RY.  2020.  Direct involvement of Hsp70 ATP hydrolysis in Ubr1-dependent quality control.. Mol Biol Cell. :mbcE20080541.
Singh P, Macdonald DW.  2017.  Populations and activity patterns of clouded leopards and marbled cats in Dampa Tiger Reserve, India. JOURNAL OF MAMMALOGY. 98(5):1453-1462.
Singh J, Udgaonkar JB.  2015.  Molecular Mechanism of the Misfolding and Oligomerization of the Prion Protein: Current Understanding and Its Implications.. Biochemistry. 54(29):4431-42.
Singh G, Kumar S, Das R.  2023.  Decoding the Assembly of Mixed and Branched Heterotypic Ubiquitin Chains.. Anal Chem. 95(26):10061-10067.
Singh A, Thakur NL, Sheikh F.  2022.  Differential tolerance capacity of intertidal organisms (sponge and zoanthid) to the environmental stresses: Preliminary Bndings from a rockpool transplantation experiment. JOURNAL OF EARTH SYSTEM SCIENCE. 131(1)
Singh P, Srivathsa A, Macdonald DW.  2020.  Conservation status of the dhole Cuon alpinus in north-east India, with a focus on Dampa Tiger Reserve, Mizoram. ORYX. 54(6):873-877.
Singh AS, Shah A, Brockmann A.  2018.  Honey bee foraging induces upregulation of early growth response protein 1, hormone receptor 38 and candidate downstream genes of the ecdysteroid signalling pathway.. Insect Mol Biol. 27(1):90-98.
Singh J, Raina R, Vinothkumar KR, Anand R.  2022.  Decoding the Mechanism of Specific RNA Targeting by Ribosomal Methyltransferases.. ACS Chem Biol.
Singh M, Roychowdhury A, Gupta A.  2022.  Defects and metric anomalies in Foppl-von Karman surfaces. PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES. 478(2262):20210829.
Singh AKumar, Walavalkar K, Tavernari D, Ciriello G, Notani D, Sabarinathan R.  2023.  Cis-regulatory effect of HPV integration is constrained by host chromatin architecture in cervical cancers.. Mol Oncol.
Singh A, Chakrabarti S.  2023.  Diffusion controls local versus dispersed inheritance of histones during replication and shapes epigenomic architecture.. PLoS Comput Biol. 19(12):e1011725.
Singh A, Hulsmeier J, Kandi AReddy, Pothapragada SShruti, Hillebrand J, Petrauskas A, Agrawal K, Rt K, Thiagarajan D, Jayaprakashappa D et al..  2021.  Antagonistic roles for Ataxin-2 structured and disordered domains in RNP condensation.. Elife. 10
Singh A, Kandi AReddy, Jayaprakashappa D, Thuery G, Purohit DJ, Huelsmeier J, Singh R, Pothapragada SShruti, Ramaswami M, Bakthavachalu B.  2022.  The Transcriptional Response to Oxidative Stress is Independent of Stress-Granule Formation.. Mol Biol Cell. :mbcE21080418.
Singh N, Prakash A, Chakravarthy SRanganath, Kaushik R, Ladher RK.  2022.  In Ovo and Ex Ovo Methods to Study Avian Inner Ear Development.. J Vis Exp. (184)
Singh A, Thutupalli S, Kumar M, Ameta S.  2024.  Constrained dynamics of DNA oligonucleotides in phase-separated droplets.. Biophys J.
Singh A, Soler JAntoni, Lauer J, Grill SW, Jahnel M, Zerial M, Thutupalli S.  2023.  Two-component molecular motor driven by a GTPase cycle. NATURE PHYSICS.
Singh ASurindro, Takhellambam MChanu, Cappelletti P, Feligioni M.  2020.  Immediate early gene kakusei potentially plays a role in the daily foraging of honey bees.. PLoS One. 15(5):e0222256.
Singh J, Udgaonkar JB.  2016.  Unraveling the Molecular Mechanism of pH-Induced Misfolding and Oligomerization of the Prion Protein.. J Mol Biol. 428(6):1345-55.
Singha T, Polley A, Barma M.  2023.  Clustering of lipids driven by integrin.. Soft Matter. 19(35):6814-6824.
Sinha S, Dwivedi TRaj, Yengkhom R, Bheemsetty VAnudeep, Abe T, Kiyonari H, VijayRaghavan K, Inamdar MS.  2019.  Asrij/OCIAD1 suppresses CSN5-mediated p53 degradation and maintains mouse hematopoietic stem cell quiescence.. Blood.
Sinha V, Goyal A, Svenningsen SL, Semsey S, Krishna S.  2017.  In silico Evolution of Lysis-Lysogeny Strategies Reproduces Observed Lysogeny Propensities in Temperate Bacteriophages.. Front Microbiol. 8:1386.
Sitaraman S, Yadav G, Agarwal V, Jabeen S, Verma S, Jadhav M, Thirumalai V.  2021.  Gjd2b-mediated gap junctions promote glutamatergic synapse formation and dendritic elaboration in Purkinje neurons.. Elife. 10
Sitaraman S.  2021.  A monster of a disease.. Elife. 10
Smith MD, Koerner SE, Avolio ML, Komatsu KJ, Eby S, Forrestel EJ, Collins SL, Wilcox KR, Ahumada R, Morgan JW et al..  2022.  Richness, not evenness, varies across water availability gradients in grassy biomes on five continents.. Oecologia. 199(3):649-659.
Sneppen K, Semsey S, Seshasayee ASN, Krishna S.  2015.  Restriction modification systems as engines of diversity.. Front Microbiol. 6:528.
Solari KA, Ramakrishnan U, Hadly EA.  2018.  Gene expression is implicated in the ability of pikas to occupy Himalayan elevational gradient.. PLoS One. 13(12):e0207936.
Soman S, Bhattacharya A, Panicker MM.  2020.  Dopamine requires unique residues to signal via the serotonin 2A receptor.. Neuroscience. 319-331:319-331.
Somasundaram S, Véry A-A, Vinekar RS, Ishikawa T, Kumari K, Pulipati S, Kumaresan K, Corratgé-Faillie C, Sowdhamini R, Parida A et al..  2020.  Homology modeling identifies crucial amino-acid residues that confer higher Na+ transport capacity of OcHKT1;5 from Oryza coarctata Roxb.. Plant Cell Physiol.
Someshwar A, Holla B, Agarwal PPansari, Thomas A, Jose A, Joseph B, Raju B, Karle H, Muthukumaran M, Kodancha PG et al..  2020.  Adverse childhood experiences in families with multiple members diagnosed to have psychiatric illnesses.. Aust N Z J Psychiatry. :4867420931157.
Sommerlandt FMJ, Brockmann A, Rössler W, Spaethe J.  2019.  Immediate early genes in social insects: a tool to identify brain regions involved in complex behaviors and molecular processes underlying neuroplasticity.. Cell Mol Life Sci. 76(4):637-651.
Sondhi S, Basu DNath, Sondhi Y, Kunte K.  2020.  A new species of Metallolophia Warren, 1895 (Lepidoptera: Geometridae: Geometrinae), and notes on M. opalina (Warren, 1893), from eastern Himalaya, India. ZOOTAXA. 4838(2):289-297.
Sondhi S., Kunte K.  2016.  Butterflies (Lepidoptera) of the Kameng Protected Area Complex, western Arunachal Pradesh, India. Journal of Threatened Taxa. 8:9053–9124.
Sondhi Y, Kitching IJ, Basu DNath, Kunte K.  2017.  A new species of Theretra Hubner (Lepidoptera: Sphingidae) from the southern Western Ghats, India. ZOOTAXA. 4323(2):185-196.
Sondhi S, Efetov KA, Tarmann GM, Karmakar T, Pawar U, Kunte K.  2024.  A new species of Piarosoma Hampson, 1893 (Lepidoptera, Zygaenidae, Procridinae, Artonini) from Arunachal Pradesh, India.. Zootaxa. 5270(1):139-145.
Sondhi S., Karmakar T., Sondhi Y., Jhaveri R., Kunte K.  2016.  Re-discovery of Calinaga aborica Tytler, 1915 (Lepidoptera: Nymphalidae: Calinaginae) from Arunachal Pradesh, India. Journal of Threatened Taxa. 8:8618–8622.
Sood P, Murthy K, Kumar V, Nonet ML, Menon GI, Koushika SP.  2018.  Cargo crowding at actin-rich regions along axons causes local traffic jams.. Traffic. 19(3):166-181.
Soota D, Saravanan B, Mann R, Kharbanda T, Notani D.  2024.  RNA fine-tunes estrogen receptor-alpha binding on low-affinity DNA motifs for transcriptional regulation.. EMBO J.
Sowdhamini R, Mizuguchi K.  2017.  Editorial-Sequences and topology.. Curr Opin Struct Biol.
Spang A, Mayor S.  2018.  Editorial Overview: Membranes and organelles: rethinking membrane structure, function and compartments.. Curr Opin Cell Biol. 53:A1-A3.
Spedding M, Chattarji S, Spedding C, Jay TM.  2020.  Brain circuits at risk in psychiatric diseases and pharmacological pathways.. Therapie. S0040-5957(20):30222-5.
Spedding M, Chattarji S, Spedding C, Jay TM.  2021.  Brain circuits at risk in psychiatric diseases and pharmacological pathways.. Therapie. 76(2):75-86.
Sreedharan V, Bhalla US, Ramakrishnan N.  2023.  Using sensitivity analyses to understand bistable system behavior.. BMC Bioinformatics. 24(1):136.
Sreekar R, Srinivasan U, Mammides C, Chen J, Goodale UManage, Kotagama SWimalaband, Sidhu S, Goodale E.  2015.  The effect of land-use on the diversity and mass-abundance relationships of understory avian insectivores in Sri Lanka and southern India.. Sci Rep. 5:11569.
Sreepadmanabh M, Ganesh M, Bhat R, Bhattacharjee T.  2023.  Jammed microgel growth medium prepared by flash-solidification of agarose for 3D cell culture and 3D bioprinting.. Biomed Mater.
Sreepadmanabh M, Arun AB, Bhattacharjee T.  2024.  Design approaches for 3D cell culture and 3D bioprinting platforms.. Biophys Rev (Melville). 5(2):021304.
Sreeraj VS, Puzhakkal JC, Holla B, Nadella RKumar, Sheth S, Balachander S, Ithal D, Ali F, Viswanath B, Muralidharan K et al..  2021.  Cross-diagnostic evaluation of minor physical anomalies in psychiatric disorders.. J Psychiatr Res. 142:54-62.
Srinivasachari S, Tiwari VR, Kharbanda T, Sowdamini R, Subramanian R.  2023.  A dimer between monomers and hexamers-Oligomeric variations in glucosamine-6-phosphate deaminase family.. PLoS One. 18(1):e0271654.
Srinivasan U, Quader S.  2019.  Size–logging interactions and population dynamics in tropical understorey birds. Current Science. 116(5):795-801.
Srinivasan R, Scolari VFerdinando, Lagomarsino MCosentino, Seshasayee ASai Narain.  2015.  The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli.. Nucleic Acids Res. 43(1):295-308.
Srinivasan N, Mudgal R, Kumar G, Chandra NR, Sowdhamini R, Sandhya S.  2015.  161 Bridging the islands of protein families in sequence space using artificial sequences.. J Biomol Struct Dyn. 33 Suppl 1:103-4.

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