Y
Yadahalli S, Jayanthi LP, Gosavi S.
2022. A Method for Assessing the Robustness of Protein Structures by Randomizing Packing Interactions.. Front Mol Biosci. 9:849272.
V
Viswan NAnn, Tribut A, Gasparyan M, Radulescu O, Bhalla US.
2024. Mathematical basis and toolchain for hierarchical optimization of biochemical networks.. PLoS Comput Biol. 20(12):e1012624.
Vijayasarathy M, Balaram P.
2018. Mass spectrometric identification of bromotryptophan containing conotoxin sequences from the venom of C. amadis.. Toxicon. 144:68-74.
Vijayaraghavareddy P, Akula NN, Vemanna RS, Math RGH, Shinde DD, Yin X, Struik PC, Makarla U, Sreeman S.
2021. Metabolome profiling reveals impact of water limitation on grain filling in contrasting rice genotypes.. Plant Physiol Biochem. 162:690-698.
Venkatesan R, Balaram P, Kalmankar NV.
2021. Mass spectrometric analysis of cyclotides from Clitoria ternatea: Xxx-Pro bond fragmentation as convenient diagnostic of Pro residue positioning.. Chem Asian J.
Varma A, Udupa S, Sengupta M, Ghosh PKumar, Thirumalai V.
2024. A machine-learning tool to identify bistable states from calcium imaging data.. J Physiol.
U
T
Turner LM, Thorpe CJ, Collins M, Raj S, Shukla T, Spicer JI, Knight ME, Sharma D, Kunte K.
2025. Metabolic Diversity of a Widely Distributed Tropical Freshwater Crab Is Not Underpinned by Genetic Differences. Journal of Biogeography.
Trivedi DV, Nag S, Spudich A, Ruppel KM, Spudich JA.
2020. The Myosin Family of Mechanoenzymes: From Mechanisms to Therapeutic Approaches.. Annu Rev Biochem.
Tirumalai V, Swetha C, Nair A, Pandit A, Shivaprasad PV.
2019. miR828 and miR858 regulate VvMYB114 to promote anthocyanin and flavonol accumulation in grapes.. J Exp Bot.
Thottacherry JJose, Kosmalska AJoanna, Kumar A, Vishen ASingh, Elosegui-Artola A, Pradhan S, Sharma S, Singh PP, Guadamillas MC, Chaudhary N et al..
2018. Mechanochemical feedback control of dynamin independent endocytosis modulates membrane tension in adherent cells.. Nat Commun. 9(1):4217.
Thorpe CJ, Lewis TR, Kulkarni S, Watve A, Gaitonde N, Pryce D, Davies L, Bilton DT, Knight ME.
2018. Micro-habitat distribution drives patch quality for sub-tropical rocky plateau amphibians in the northern Western Ghats, India.. PLoS One. 13(3):e0194810.
Theeyancheri L, Chaki S, Bhattacharjee T, Chakrabarti R.
2022. Migration of active rings in porous media.. Phys Rev E. 106(1-1):014504.
Thatte P, Joshi A, Vaidyanathan S, Landguth E, Ramakrishnan U.
2018. Maintaining tiger connectivity and minimizing extinction into the next century: Insights from landscape genetics and spatially-explicit simulations . BIOLOGICAL CONSERVATION . 218:181-191.
Thattai M.
2023. Molecular and cellular constraints on vesicle traffic evolution.. Curr Opin Cell Biol. 80:102151.
Terse VL, Gosavi S.
2021. The molecular mechanism of domain-swapping of the C-terminal domain of the SARS coronavirus main protease. Biophys J. 120(3):504-516.
S
Syama A, Sen S, Kota LNarayanan, Viswanath B, Purushottam M, Varghese M, Jain S, Panicker MM, Mukherjee O.
2018. Mutation burden profile in familial Alzheimer's disease cases from India.. Neurobiol Aging. 64:158.e7-158.e13.
Swetha C, Basu D, Pachamuthu K, Tirumalai V, Nair A, Prasad M, Shivaprasad PV.
2018. Major domestication-related phenotypes in indica rice are due to loss of miRNA-mediated laccase silencing.. Plant Cell.
Srivastava V, Patra K, Pai H, Aguilar-Pontes MVictoria, Berasategui A, Kamble A, Di Pietro A, Redkar A.
2024. Molecular Dialogue During Host Manipulation by the Vascular Wilt Fungus .. Annu Rev Phytopathol. 62(1):97-126.
Soler JAntoni, Singh A, Zerial M, Thutupalli S.
2025. Motor Function of the Two-Component EEA1-Rab5 Revealed by dcFCCS.. Methods Mol Biol. 2881:87-115.
Singha D, Patidar A, Pal S, Tyagi K, Kumar V.
2024. Mitochondrial genetic diversity of pest and vector species, Frankliniella schultzei (Thripidae: Thripinae).. Mol Biol Rep. 52(1):55.
Singh G, George G, Raja SO, Kandaswamy P, Kumar M, Thutupalli S, Laxman S, Gulyani A.
2023. A molecular rotor FLIM probe reveals dynamic coupling between mitochondrial inner membrane fluidity and cellular respiration.. Proc Natl Acad Sci U S A. 120(24):e2213241120.
Singh N, Kaushik R, Prakash A, Saini SSingh, Garg S, Adhikary A, Ladher RK.
2024. Mosaic Atoh1 deletion in the chick auditory epithelium reveals a homeostatic mechanism to restore hair cell number.. Dev Biol. 516:35-46.
Singh J, Udgaonkar JB.
2015. Molecular Mechanism of the Misfolding and Oligomerization of the Prion Protein: Current Understanding and Its Implications.. Biochemistry. 54(29):4431-42.
Shivakumaraswamy S, Kumar S, Bellur A, Polisetty SDev, Balaram H.
2022. Mechanistic Insights into the Functioning of a Two-Subunit GMP Synthetase, an Allosterically Regulated, Ammonia Channeling Enzyme. BIOCHEMISTRY. 61(18):1988-2006.
Sharma A, Hasan G.
2020. Modulation of flight and feeding behaviours requires presynaptic IPRs in dopaminergic neurons.. Elife. 9
Sezgin E, Levental I, Mayor S, Eggeling C.
2017. The mystery of membrane organization: composition, regulation and roles of lipid rafts.. Nat Rev Mol Cell Biol.
Sengupta I, Udgaonkar J.
2019. Monitoring site-specific conformational changes in real-time reveals a misfolding mechanism of the prion protein.. Elife. 8
Sen S, Kumar H, Udgaonkar JB.
2021. Microsecond dynamics during the binding-induced folding of an intrinsically disordered protein.. J Mol Biol. :167254.
Schwarz O, Bohra AAsgar, Liu X, Reichert H, VijayRaghavan K, Pielage J.
2017. Motor control of Drosophila feeding behavior.. Elife. 6
Sathyanarayanan N, Cannone G, Gakhar L, Katagihallimath N, Sowdhamini R, Ramaswamy S, Vinothkumar KR.
2019. Molecular basis for metabolite channeling in a ring opening enzyme of the phenylacetate degradation pathway.. Nat Commun. 10(1):4127.
Sant HH, Sane SP.
2018. The Mechanosensory-Motor Apparatus of Antennae in the Oleander hawk moth (Daphnis nerii, Lepidoptera).. J Comp Neurol.
Sane SP, Wehling R, Daniel T.
2024. Multisensory integration in insect flight control.. Biol Lett. 20(1):20230565.
Sachdeva K, Goel M, Sudhakar M, Mehta M, Raju R, Raman K, Singh A, Sundaramurthy V.
2020. Mycobacterium tuberculosis ( Mtb) lipid mediated lysosomal rewiring in infected macrophages modulates intracellular Mtb trafficking and survival. J Biol Chem. 295(27):9192-9210.
Sabarinathan R, Anthon C, Gorodkin J, Seemann SE.
2018. Multiple Sequence Alignments Enhance Boundary Definition of RNA Structures.. Genes (Basel). 9(12)
Sabareesan AThody, Mathew MK, Udgaonkar JB.
2018. Mechanism of aggregation and membrane interactions of mammalian prion protein.. Biochim Biophys Acta.
R
Rupprecht J-F, A Vishen S, Shivashankar GV, Rao M, Prost J.
2018. Maximal Fluctuations of Confined Actomyosin Gels: Dynamics of the Cell Nucleus.. Phys Rev Lett. 120(9):098001.
Roy N, Sundar S, Pillai M, Patell-Socha F, Ganesh S, Aloysius A, Rumman M, Gala H, Hughes SM, Zammit PS et al..
2021. mRNP granule proteins Fmrp and Dcp1a differentially regulate mRNP complexes to contribute to control of muscle stem cell quiescence and activation.. Skelet Muscle. 11(1):18.
Roselli C, Ramaswami M, Boto T, Cervantes-Sandoval I.
2021. The Making of Long-Lasting Memories: A Fruit Fly Perspective.. Front Behav Neurosci. . 15
Riedel N, Fuller DQ, Marwan N, Poretschkin C, Basavaiah N, Menzel P, Ratnam J, Prasad S, Sachse D, Sankaran M et al..
2021. Monsoon forced evolution of savanna and the spread of agro-pastoralism in peninsular India.. Sci Rep. 11(1):9032.
Rege A, Punjabi GArjun, Jathanna D, Kumar A.
2020. Mammals Make Use of Cashew Plantations in a Mixed Forest-Cashew Landscape. FRONTIERS IN ENVIRONMENTAL SCIENCE. 8(556942)
Rathore S, Gahlot D, Castin J, Pandey A, Arvindekar S, Viswanath S, Thukral L.
2025. Multiscale simulations reveal architecture of NOTCH protein and ligand specific features.. Biophys J. 124(2):393-407.
Rasquinha DN, Sankaran M.
2016. Modelling biome shifts in the Indian subcontinent under scenarios of future climate change . Current Science. 111(1):147-156.
Ramesh D, Brockmann A.
2019. Mass Spectrometric Quantification of Arousal Associated Neurochemical Changes in Single Honey Bee Brains and Brain Regions.. ACS Chem Neurosci. 10(4):950-1959.
Raghavender US, Sowdhamini R.
2015. Mechanistic Basis Of Peptide-Protein Interaction In AtPep1-PEPR1 Complex In Arabidopsis thaliana.. Protein Pept Lett. 22(7):618-27.
P
Punjabi GA, Havmøller LWorsøe, Havmøller RWorsøe, Ngoprasert D, Srivathsa A.
2022. Methodological approaches for estimating populations of the endangered dhole .. PeerJ. 10:e12905.
Prusty AD, Sane SP.
2024. The motor apparatus of head movements in the Oleander hawkmoth (Daphnis nerii, Lepidoptera).. J Comp Neurol. 532(1):e25577.
Pramanik R, Nannaware K, Malik V, Shah P, Sangewar P, Gogate N, Shashidhara LS, Boargaonkar R, Patil D, Kale S et al..
2024. Monitoring Influenza A (H1N1, H3N2), RSV, and SARS-CoV-2 Using Wastewater-Based Epidemiology: A 2-Year Longitudinal Study in an Indian Megacity Covering Omicron and Post-Omicron Phases.. Food Environ Virol. 17(1):3.
Pillai AAS, Anoop A, Prasad V.
2018. Multi-proxy evidence for an arid shift in the climate and vegetation of the Banni grasslands of western India during the mid- to late-Holocene. Holocene. 28(7):10572-1070.
Pasani S, Menon KS, Viswanath S.
2024. The molecular architecture of the desmosomal outer dense plaque by integrative structural modeling.. Protein Sci. 33(12):e5217.
N
M
Mutt E, Sowdhamini R.
2016. Molecular Dynamics Simulations and Structural Analysis to Decipher Functional Impact of a Twenty Residue Insert in the Ternary Complex of Mus musculus TdT Isoform.. PLoS One. 11(6):e0157286.
Mosby LS, Hundt N, Young G, Fineberg A, Polin M, Mayor S, Kukura P, Köster DV.
2020. Myosin II Filament Dynamics in Actin Networks Revealed with Interferometric Scattering Microscopy.. Biophys J. 118(8):1946-1957.
Mondal S, Kallianpur MV, Udgaonkar JB, Krishnamoorthy G.
2016. Molecular crowding causes narrowing of population heterogeneity and restricts internal dynamics in a protein. METHODS AND APPLICATIONS IN FLUORESCENCE. 4(1)
Mohamed HM, Lakshmanan V, Sarkar SR, Lei K, Vemula PK, Palakodeti D.
2021. Mitochondrial state determines functionally divergent stem cell population in planaria. Stem Cell Reports.
Mogre A, Veetil RT, Seshasayee ASai Narain.
2017. Modulation of Global Transcriptional Regulatory Networks as a Strategy for Increasing Kanamycin Resistance of the Translational Elongation Factor-G Mutants in Escherichia coli.. G3 (Bethesda). 7(12):3955-3966.
Melvin P, Bankapalli K, D'Silva P, Shivaprasad PV.
2017. Methylglyoxal detoxification by a DJ-1 family protein provides dual abiotic and biotic stress tolerance in transgenic plants.. Plant Mol Biol.
Marshall DC, Moulds M, Hill KBR, Price BW, Wade EJ, Owen CL, Goemans G, Marathe K, Sarkar V, et al..
2018. A molecular phylogeny of the cicadas (Hemiptera: Cicadidae) with a review of tribe and subfamily classification. ZOOTAXA. 4424(1):1-64.
Manikkaraja C, Bhavika M, Singh R, Nagarathnam B, George G, Gulyani A, Archunan G, Sowdhamini R.
2020. Molecular and functional characterization of buffalo nasal epithelial odorant binding proteins and their structural insights by in silico and biochemical approaches. J Biomol Struct Dyn. :1-24.
Mam B, Karpe SD, Sowdhamini R.
2023. Minus-C subfamily has diverged from Classic odorant-binding proteins in honeybees. APIDOLOGIE . 54(1):12.
Madhusudan M.D, Vanak ATamim.
2022. Mapping the distribution and extent of India's semi-arid open natural ecosystems. JOURNAL OF BIOGEOGRAPHY.
L
Lajmi A, Giri VB, K. Karanth P.
2016. Molecular data in conjunction with morphology help resolve the Hemidactylus brookii complex (Squamata: Gekkonidae). ORGANISMS DIVERSITY & EVOLUTION. 16(3):659-677.
K
Kuwalekar M, Deshmukh R, Padvi A, Kunte K.
2020. Molecular Evolution and Developmental Expression of Melanin Pathway Genes in Lepidoptera. FRONTIERS IN ECOLOGY AND EVOLUTION. 8
G Kumar A, Sarkar P, Stepniewski TMaciej, Jafurulla M, Singh SPal, Selent J, Chattopadhyay A.
2021. A molecular sensor for cholesterol in the human serotonin receptor.. Sci Adv. 7(30)
Kumar A, Shahul AK, Bhalla USingh.
2025. Mechanisms and implications of high depolarization baseline offsets in conductance-based neuronal models.. J Neurophysiol.
Kumar H, Udgaonkar JB.
2019. Mechanistic approaches to understand the prion-like propagation of aggregates of the human tau protein.. Biochim Biophys Acta Proteins Proteom. 1867(10):922-932.
Kumar H, Udgaonkar JB.
2018. Mechanistic and Structural Origins of the Asymmetric Barrier to Prion-like Cross-Seeding between Tau-3R and Tau-4R.. J Mol Biol.
Kumar S, M Venkatesha A, Lall S, Prakash S, Balaram P.
2020. Mechanistic Insights into an Unusual Side-Chain-Mediated N-C Bond Cleavage under Collision-Induced Dissociation Conditions in the Disulfide-Containing Peptide Conopressin.. J Am Soc Mass Spectrom. 31(5):1083-1092.
Kumar H, Singh J, Kumari P, Udgaonkar JB.
2017. Modulation of the extent of structural heterogeneity in α-synuclein fibrils by the small molecule thioflavin T.. J Biol Chem.
Kumar S, M Venkatesha A, Balaram P.
2022. Mechanistic Investigations on N-C Bond Cleavages in Dibasic Peptides Containing Internal Lys and Arg Residues.. J Am Soc Mass Spectrom.
Krishna S, Laxman S.
2018. A minimal "push-pull" bistability model explains oscillations between quiescent and proliferative cell states.. Mol Biol Cell. :mbcE18010017.
Kizhedathu A, Kunnappallil RSebastian, Bagul AV, Verma P, Guha A.
2020. Multiple Wnts act synergistically to induce Chk1/Grapes expression and mediate G2 arrest in Drosophila tracheoblasts.. Elife. 9
Khattri M, Amako Y, Gibbs JR, Collura JL, Arora R, Harold A, Li MYen, Harms PW, Ezhkova E, Shuda M.
2023. Methyltransferase-independent function of enhancer of zeste homologue 2 maintains tumorigenicity induced by human oncogenic papillomavirus and polyomavirus.. Tumour Virus Res. :200264.
Kaushik S, Mahadeva M, Sundaramurthy V, Soni GVivek.
2020. Measurement of Alcohol-Dependent Physiological Changes in Red Blood Cells Using Resistive Pulse Sensing.. ACS Sens.
Kashyap A, Sebastian SAnne, NarayanaSwamy SRaksha Kri, Raksha KK, Krishnamurthy H, Krishna B, D'Souza G, Idiculla J, Vyas N.
2022. Molecular markers for early stratification of disease severity and progression in COVID-19.. Biol Methods Protoc. 7(1):bpac028.
Kabir S, Venkatesan R, Thaker M.
2019. Mismatch in receiver responses to multimodal signals in a diurnal gecko. Animal Behaviour. 147:115-123.
J
Joseph AMary, Nahar K, Daw S, Hasan MMahbub, Lo R, Le TBK, Rahman KMiraz, Badrinarayanan A.
2022. Mechanistic insight into the repair of C8-linked pyrrolobenzodiazepine monomer-mediated DNA damage.. RSC Med Chem. 13(12):1621-1633.
Jha S, Bose S, Vinothkumar KR.
2024. Modeling Ligands into Maps Derived from Electron Cryomicroscopy.. J Vis Exp. (209)
Jethva PN, Udgaonkar JB.
2017. Modulation of the Extent of Cooperative Structural Change During Protein Folding by Chemical Denaturant.. J Phys Chem B. 121(35):8263-8275.
Jayanth N, Puranik M.
2017. Mechanism of Discrimination of 8-Oxoguanosine versus Guanosine by Escherichia coli Fpg.. J Phys Chem B.
H
Huang Z-F, Chiba H, Jin J, Kizhakke AG, Wang M, Kunte K, Fan X.
2019. A multilocus phylogenetic framework of the tribe Aeromachini (Lepidoptera: Hesperiidae: Hesperiinae), with implications for taxonomy and biogeography. Systematic Entomology.
Hou Y, Cao C, Chiba H, Chang Z, Huang S, Zhu L, Kunte K, Huang Z, Wang M, Fan X.
2023. Molecular phylogeny, historical biogeography, and classification of Pseudocoladenia butterflies (Lepidoptera: Hesperiidae).. Mol Phylogenet Evol. 186:107865.
Hill KBR, Marshall DC, Marathe K, Moulds MS, Lee YJune, Pham T-H, Mohagan AB, Sarkar V, Price BW, Duffels J.P et al..
2021. The molecular systematics and diversification of a taxonomically unstable group of Asian cicada tribes related to Cicadini Latreille, 1802 (Hemiptera : Cicadidae). INVERTEBRATE SYSTEMATICS.
Habibullah BIsmail, Tripathi V, Surana P, Das R.
2020. Monitoring protein ubiquitination and SUMOylation in real-time by NMR.. Chem Commun (Camb). 56(49):6735-6738.
G
Gupte TM, Haque F, Gangadharan B, Sunitha MS, Mukherjee S, Anandhan S, Rani DSelvi, Mukundan N, Jambekar A, Thangaraj K et al..
2015. Mechanistic heterogeneity in contractile properties of α-tropomyosin (TPM1) mutants associated with inherited cardiomyopathies.. J Biol Chem. 290(11):7003-15.
Gupte TM.
2015. Mitochondrial Fragmentation Due to Inhibition of Fusion Increases Cyclin B through Mitochondrial Superoxide Radicals.. PLoS One. 10(5):e0126829.
Goyal A.
2018. Metabolic adaptations underlying genome flexibility in prokaryotes.. PLoS Genet. 14(10):e1007763.
Goyal P, Dhanabalan KV, Scalise M, Friemann R, Indiveri C, Dobson RCJ, Vinothkumar KR, Ramaswamy S.
2025. Molecular determinants of Neu5Ac binding to a tripartite ATP independent periplasmic (TRAP) transporter.
Goyal A, Dubinkina V, Maslov S.
2018. Multiple stable states in microbial communities explained by the stable marriage problem.. ISME J.
Gopurappilly R, Deb BKumar, Chakraborty P, Hasan G.
2019. Measurement of Store-Operated Calcium Entry in Human Neural Cells: From Precursors to Differentiated Neurons.. Methods Mol Biol. 2029:257-271.
Goodale E, Sridhar H, Sieving KE, Bangal P, Z GJColorado, Farine DR, Heymann EW, Jones HH, Krams I, Martínez AE et al..
2020. Mixed company: a framework for understanding the composition and organization of mixed-species animal groups.. Biol Rev Camb Philos Soc.
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